- Probe CUST_5216_PI390587928
- Source Contig U35_13736
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5216_PI390587928 | Hv_44K_v2 | TTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGACTACAACATCCAGAAGGAGT | 219 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372915 | 1481 | 2e-23 | 913 - 970 | 100 | 58 / 58 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC49011 ABC49693 ABC50770 |
| MLOC | AK354759 | 1306 | 7e-23 | 694 - 753 | 98 | 59 / 60 | plus | ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC49693 ABC50770 |
| MLOC | AK252178.1 | 1017 | 9e-22 | 502 - 559 | 98 | 57 / 58 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770 |
| MLOC | AK249379.1 | 803 | 9e-22 | 273 - 330 | 98 | 57 / 58 | plus | ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01056 ABC01068 ABC01072 ABC01078 ABC01079 ABC01086 ABC01094 ABC01106 ABC01110 ABC01114 ABC01117 ABC22044 ABC39287 ABC40413 ABC40573 ABC49011 ABC49693 ABC50770 |
| MLOC | AK372493 | 1722 | 3e-21 | 473 - 532 | 97 | 58 / 60 | plus | ABC01030 ABC01035 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01046 ABC01048 ABC01050 ABC01051 ABC01053 ABC01056 ABC01058 ABC01072 ABC01078 ABC01079 ABC01094 ABC01106 ABC01108 ABC01110 ABC01114 ABC01117 ABC22044 ABC24558 ABC39287 ABC39599 ABC40413 ABC49693 ABC50770 |
| JLOC1 | JLOC1_22970.1 | 312 | 1e-23 | 236 - 293 | 100 | 58 / 58 | minus | |
| JLOC1 | JLOC1_9115.1 | 698 | 4e-23 | 546 - 605 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC01072 | 1035 | 4e-24 | 438 - 495 | 100 | 58 / 58 | plus | ABC01072 |
| Harvest21 | ABC01106 | 666 | 1e-23 | 169 - 228 | 98 | 59 / 60 | plus | ABC01106 |
| Harvest21 | ABC01080 | 469 | 1e-23 | 215 - 274 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01055 | 794 | 1e-23 | 684 - 743 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01051 | 1425 | 8e-21 | 1142 - 1196 | 98 | 54 / 55 | plus | ABC01051 |
| Harvest21 | ABC01081 | 1143 | 2e-22 | 898 - 955 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC01067 | 528 | 2e-22 | 223 - 280 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC01042 | 1006 | 2e-22 | 474 - 531 | 98 | 57 / 58 | plus | ABC01042 |
| Harvest21 | ABC27602 | 547 | 6e-22 | 394 - 453 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01119 | 1047 | 6e-22 | 468 - 527 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC01104 | 800 | 6e-22 | 700 - 759 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01045 | 637 | 6e-22 | 143 - 202 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01033 | 1029 | 6e-22 | 475 - 534 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC40412 | 602 | 8e-21 | 453 - 507 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_13736 | 602 | 8e-21 | 453 - 507 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_13835 | 1441 | 8e-21 | 1157 - 1211 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_13726 | 1182 | 1e-23 | 684 - 743 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37652 | 715 | 2e-22 | 206 - 263 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_13733 | 1110 | 2e-22 | 492 - 549 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_28625 | 547 | 6e-22 | 394 - 453 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_13886 | 633 | 6e-22 | 105 - 164 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_13656 | 2056 | 6e-22 | 1387 - 1446 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_13744 | 759 | 8e-21 | 223 - 280 | 97 | 56 / 58 | plus |
Contig Sequence (602 bp)
>U35_13736 602 Hv_44K_v2 AAAGCAACGGAACCAACAAATCCCCAACCAATCTCGTCTCCAATCGACCCGAGGCTCGTC GAATCCTCCCTCCCCGCCGCCTCAAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGA CCATCACCCTTGAGGTGGAGTCATCTGACACCATCGACAACGTCAAGGCCAAGATCCAGG ATAAGGAGGGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAGCTGGAGG ATGGTCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCTACCCTTCACCTGGTGCTCC GCCTCCGTGGTGGCATGCAGATCTTCGTCAAGACCCTGACTGGGAAGACCATCACTCTGG AGGTTGAGAGCTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCA TTCCCCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCC TTGCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTCCGTGGTG GTCAGTAATTGCCGTGTGTCGTCCGGTGGGTGTGCCTCTTTGTTCAAGTGTCGTCTCGTC TG
Homology of Contig U35_13736 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53620.4 | 230 | 5e-101 | protein|ubiquitin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g04730.2 | 230 | 3e-102 | |
| Arabidopsis v10 | AT4G05050.1 | 229 | 2e-101 | | Symbols: UBQ11 | ubiquitin 11 | chr4:2588271-2588960 REVERSE LENGTH=229 |