barSeed - Barley Seed Development Database

Probe ABC35392

Source Contig ABC35392

barSeed

Links

Affymetrix Source Sequence (424 bp)

>ABC35392 424
ATTCAGCAAGGTTGGGTTCATCTTCCGTGAGCACAACGCATCTCCTGGGTACTACGATGG
CCGGTACTGGACAATGTGGAACCTGCCTATGTTCGGATGCACCGACTCCTCACAGGTGCT
CATCGAGGTGGAGGAGGTCAAAAAGGAGTTCCCTAGCGCGTATGTCCGCATCATCGGATT
CGACAACATGTGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCTCCAGGCTACGA
GGAGTTCGGCAAGGCATTAACAGCTCACTGGCGATGGGCCACATATAAAGTGCCATTGCA
GTTTTGTCAACTCTGACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATATGTT
CCTAAGAATATGTGTATGTCCATGTTCATGTTCCAACATGGCTCCAGAAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249082.1	978	0.0	444 - 853	96	393 / 410	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_34605_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK249588.1	1172	0.0	652 - 1061	96	393 / 410	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	0.0	1125 - 1534	96	393 / 410	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	0.0	1907 - 2316	96	393 / 410	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	0.0	1249 - 1658	96	393 / 410	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_28839_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928 CUST_17538_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC_64679.1	900	0.0	373 - 780	95	388 / 409	CUST_9745_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK248995.1	983	3e-180	443 - 849	95	387 / 409	CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_34605_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK252634.1	2122	4e-89	279 - 547	89	239 / 269	CUST_34592_PI390587928 CUST_5460_PI390587928 CUST_7871_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
AK364796	4776	4e-89	2380 - 2648	89	239 / 269	CUST_34592_PI390587928 CUST_9769_PI390587928 CUST_13700_PI390587928 CUST_34600_PI390587928 CUST_28649_PI390587928 CUST_40537_PI390587928 CUST_3325_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC_44795.3	1330	4e-89	403 - 671	89	239 / 269	CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928
MLOC_44795.2	1219	4e-89	698 - 966	89	239 / 269	CUST_34592_PI390587928 CUST_9769_PI390587928 CUST_34600_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC_44795.1	1069	4e-89	630 - 898	89	239 / 269	CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
AK249454.1	954	6e-83	311 - 570	88	230 / 261	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK358991	2554	6e-83	312 - 571	88	230 / 261	CUST_9768_PI390587928 CUST_19879_PI390587928 CUST_3649_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	6e-83	1223 - 1482	88	230 / 261	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	6e-83	537 - 796	88	230 / 261	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK356951	852	2e-82	328 - 583	88	227 / 257	CUST_16539_PI390587928 CUST_4653_PI390587928 CUST_2915_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK355094	3254	2e-82	1038 - 1293	88	227 / 257	CUST_35832_PI390587928 CUST_16539_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
AK249421.1	610	2e-82	154 - 409	88	227 / 257	CUST_16539_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK252627.1	797	3e-81	287 - 546	88	229 / 261	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
AK252708.1	811	1e-79	317 - 576	87	228 / 261	None	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45928
AK252245.1	808	4e-79	334 - 589	88	225 / 257	CUST_35758_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK249868.1	737	9e-76	246 - 486	88	213 / 242	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928