barSeed - Barley Seed Development Database

Probe ABC00838

Source Contig ABC00838

barSeed

Links

Affymetrix Source Sequence (827 bp)

>ABC00838 827
GTCCCCCGGGCTGCAGGAATTCGGTAAAGCCTGCCTCTCCTATTAGCTATCAACGATGGC
TCCCACTGTCATGTCGTCGGCAGCCACCGCCGTAGCACCCTTCCAGGGACTCAAGTCCAC
AGCTGGTCTCCCAGTCAGCCGCCTCTCCGGCAACGCGGCTGGCCTCGGCAGCGTCAGCAA
CGGCGGAAGAATCCGGTGCATGCAGGTCTGGCCGATTGAAGGCATCAAGAAGTTCGAGAC
TTTGTCTTACTTGCCACCGCTCTCCACGGAGGCACTCCTGAAGCAGGTCGACTACCTGAT
CCGCTCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGTTGGATTCATCTTCCGTGAGCA
CAATGCCTCTCCAGGGTATTACGATGGCCGATACTGGACAATGTGGAAGCTACCTATGTT
TGGGTGCACCGACGCCACACAGGTGTTAAACGAAGTGGAGGAGGTCAAGAAGGAGTACCC
TGACGCCTATGTCCGCATCATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTT
CATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCTGGCAAGGCCTAAACAAGCTAACTCCC
TTTTATCATACAACATGGTTTCGTGCCAGGTTCATTTTATTTCCCTTTTTACTTTTGTTC
TGCTTGTGTATGTGTTCTCTCCCTGCAACTCGAGTTAACATTGTATGAGTACTACAATCA
TAAGAGTACTACAACTACGTTTGGGTGAGGTGCATGTAAACTACGGCTATGCATAAAGAG
AAATATACATGATAAGAATTCCAGTGAAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364796	4776	0.0	2155 - 2953	100	799 / 799	CUST_34600_PI390587928 CUST_9769_PI390587928 CUST_13700_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_3325_PI390587928 CUST_28649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC_44795.1	1069	0.0	325 - 1069	100	745 / 745	CUST_40537_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC_44795.2	1219	1e-92	297 - 484	99	187 / 188	CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_9769_PI390587928 CUST_34600_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
AK252634.1	2122	0.0	4 - 593	100	590 / 590	CUST_5460_PI390587928 CUST_7871_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
MLOC_44795.3	1330	1e-92	2 - 189	99	187 / 188	CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928
AK249588.1	1172	0.0	382 - 919	90	487 / 542	CUST_5626_PI390587928 CUST_131_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_5031_PI390587928 CUST_34584_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	0.0	855 - 1392	90	487 / 542	CUST_40535_PI390587928 CUST_131_PI390587928 CUST_5626_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_8607_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	0.0	1637 - 2174	90	487 / 542	CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	0.0	1391 - 1928	90	487 / 542	CUST_17538_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_28839_PI390587928 CUST_131_PI390587928 CUST_5626_PI390587928 CUST_40535_PI390587928 CUST_8607_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC_64679.1	900	0.0	103 - 640	89	485 / 542	CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_9745_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK252245.1	808	0.0	64 - 592	89	476 / 533	CUST_35758_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK356951	852	0.0	58 - 586	89	472 / 533	CUST_4653_PI390587928 CUST_2915_PI390587928 CUST_16539_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK355094	3254	0.0	1035 - 1563	89	472 / 533	CUST_35832_PI390587928 CUST_4653_PI390587928 CUST_16539_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
AK252708.1	811	0.0	50 - 576	89	472 / 533	None	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45928
AK249454.1	954	1e-177	44 - 570	88	469 / 533	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK358991	2554	1e-177	45 - 571	88	469 / 533	CUST_19879_PI390587928 CUST_9768_PI390587928 CUST_28144_PI390587928 CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	1e-177	956 - 1482	88	469 / 533	CUST_28144_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	1e-177	270 - 796	88	469 / 533	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK249082.1	978	1e-161	316 - 711	93	368 / 397	CUST_5626_PI390587928 CUST_131_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_8607_PI390587928 CUST_34605_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK248995.1	983	1e-161	315 - 710	93	368 / 397	CUST_34605_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK252627.1	797	2e-134	44 - 546	84	447 / 533	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_30227.1	929	3e-128	1 - 336	91	307 / 336	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00997 ABC01004 ABC36259 ABC45928
AK249421.1	610	2e-115	100 - 412	91	284 / 313	CUST_16539_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK249868.1	737	9e-84	246 - 486	90	217 / 241	CUST_19879_PI390587928 CUST_9765_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_21811.1	509	1e-81	249 - 508	88	232 / 264	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00838 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004