barSeed - Barley Seed Development Database

Probe CUST_2915_PI390587928

Source Contig U35_485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2915_PI390587928	Hv_44K_v2	CATAGTACCGGCTATACATACTTTGTTTGCAGCTGGAAATGCCTATGTCTTGCATTTTTT	1141	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.489	8.856	1.527	0.701	0.290	0.435
Raw	430.523	445.436	62.453	50.234	4.941	10.591

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356951	852	3e-21	749 - 809	97	59 / 61	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
MLOC	MLOC_35548.1	315	3e-21	160 - 220	97	59 / 61	plus	ABC00594
MLOC	MLOC_33400.1	169	3e-21	94 - 154	97	59 / 61	minus	None
JLOC1	JLOC1_22934.1	350	2e-21	160 - 220	97	59 / 61	plus
JLOC1	JLOC1_21643.1	207	2e-21	132 - 192	97	59 / 61	minus
Harvest21	ABC49440	671	6e-22	55 - 114	97	58 / 60	minus
Harvest21	ABC00584	793	2e-21	737 - 792	98	55 / 56	plus
Harvest35	U35_485	1217	3e-25	1142 - 1201	100	60 / 60	plus
Harvest35	U35_39935	744	1e-23	110 - 169	98	59 / 60	minus

Contig Sequence (1217 bp)

>U35_485 1217 Hv_44K_v2
TTCTTTTTACTTGCTGTCACCCTATATCTAGTATGTGATGGTTTATACAGACGCTCAATC
CGAAAACGCGAGCCAAAATCCAGAAAGCATGAAAAAGAGAGCTAGATTCAAGAGTTTTCG
ACTAGTATGAAGTGCATATTGCAGATGCAGCCTGCTAATCCTCCTGTTACCATAAACAGC
CACAGCTTGACACAAATGCTAGTATAAACGCAGAGATGGATGTTTTTTTAGAGCATATTT
CTTCCAGTTTCCTTCCTTTCATTATTTCCCATTTTGTTCTCCCAAGATGCATTCCAGTAG
CACCTCCACCAGATCATACTATCATATTAGGAGCAGAATAGTTGCTGGTTTTACTTCCCC
CATAGAAAAAAGGACTAGTACTAAACCTCCTCGGTAGGCACCCAAGAGCTCCTAGAGAGG
ATCCGCCGGGGTCAACATGCTATTCGTACATCTCATCTATCAAAGTTATCTGGTCACAGA
CTGGGCAAGTCTCACTTCGCTCCATCCATTCGAGCCGCGGGCCTCCCCGTCAGCCGCCGC
TCGGGCAGCGCCGGCCTCAGCAGCGTCAGCAATGGCGGAAGGATCAGATGCATGCAGGTG
TGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCCCTCACCACG
GAGGCCCTCCTGAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCCCTGCCTCGAG
TTCAGCAAGGTTGGCTTCGTCTTCCGTGAGCACAACAGCTCCCCCGGATATTACGACGGC
CGATACTGGACAATGTGGAAGCTGCCTATGTTTGGGTGCACCGACGCCACACAGGTGCTC
AATGAGGTTGAGGAGGTCAAAAAGGAGTACCCTGACGCCTACGTCCGCATCATCGGCTTT
GACAACCTGCGGCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAGGCCACCGGGTTGCGAG
GAGTCCGGCAAGGCATAAAGTGCAAGTTGAAGTAACCGATATACATGCTATGTTAGTTCA
CATTGGTCGGTCGGCAGCTCTGCTTTCTCAATTTTACTTCTCGTTCCAATCATATGTGAA
TATACGAGCATATGTATGTAAGCACCTACCAACGTAGGTCGAGGAAGATGCATATGAGAA
TCATAGTACCGGCTATACATACTTTGTTTGCAGCTGGAAATGCCTATGTCTTGCATTTTT
TTCTTCTCATGCATTTT

Homology of Contig U35_485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19381.1	176	7e-91	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g26391.1	176	4e-100
Arabidopsis v10	AT1G67090.1	180	1e-70	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180