barSeed - Barley Seed Development Database

Probe ABC00859

Source Contig ABC00859

barSeed

Links

Affymetrix Source Sequence (1211 bp)

>ABC00859 1211
GGTTCTTCTTGAAAGCATCTAGCTCCTCACCTTCAAGCTTGGCAGTGAGGTTCTTGATGT
AGCGCTTGATGTAAGCAATAAACTGCTTCTTGTCAAAAGCAGGTTGCCCTCGTGCCGAAT
TCGGCACGAGGCCTCGTGCAGGAATTCGGCACGAGGTGCCTCCCTCTAGCAAGCTATATA
CCTACATAGTACAGCTATGGCCCCCACCGTGATGGCCTCGTCGGCCACCTCCGTCGCTCC
TTTCCAGGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCGAACGGTGCTAG
CCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGGTGCATGCAGGTGTGGCCCATCGAGGG
CATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCACTCAGCACGGAGGCCCTCCTTAA
GCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGG
GTTCATCTTCCGTGAGCACAACGCATCTCCTGGGTACTACGATGGCCGGTACTGGACAAT
GTGGAAGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTCAACGAGGTGGAGGA
GGTCAAGAAGGAGTACCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGTCA
GGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCCGGCAAGGC
ATAAACAGCTCACTGACGATGGGCCACATATAAAGTGCCATTGCAGTTTTGTCAACTCTG
ACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATTTGTTCCTAAGAATATGTGT
ATGTCCATGTTCATGTACCAACATGGCTCGAGAAAACATGCTTGTATGTGAATGCTGTCG
GTGGCTATGTATATGCACGTACGCATAATATTATACAATAATATGTCAACTATATACGTT
TTAATGGTAAAAAAAAAAAAAAAAAAAAAAAACTCCAGCACCGTGCTTATACTTTTTATT
AGGAACTTCTGTCTTAGTTTTTATCCCTAAGATGTAGGGTTATAAACATGGCCCCACGGA
ACGTTGGCCAATAATATGATATTAGTTGTATCTATAAGTGTGACATAGGGCTAAATCTCA
GGCTAGAGTATAACTAAAGGGAAAATGAGGAAGTTGTATATATTTCTTCAAAGATAGAAT
ATACAATCTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249588.1	1172	0.0	341 - 1169	100	829 / 829	CUST_40537_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928 CUST_5626_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	0.0	1137 - 1969	99	831 / 833	CUST_131_PI390587928 CUST_17538_PI390587928 CUST_38622_PI390587928 CUST_28839_PI390587928 CUST_5626_PI390587928 CUST_5031_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928 CUST_40535_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
AK369652	2395	0.0	1596 - 2395	100	800 / 800	CUST_5626_PI390587928 CUST_38622_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_5031_PI390587928 CUST_40535_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	0.0	814 - 1609	100	796 / 796	CUST_5626_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928 CUST_5031_PI390587928 CUST_40535_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC_64679.1	900	0.0	62 - 844	98	768 / 784	CUST_9745_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK249082.1	978	3e-95	11 - 200	100	190 / 190	CUST_5031_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928 CUST_34605_PI390587928 CUST_5626_PI390587928 CUST_40537_PI390587928 CUST_40535_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK248995.1	983	3e-85	10 - 199	97	184 / 190	CUST_40537_PI390587928 CUST_34605_PI390587928 CUST_38622_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK249454.1	954	0.0	44 - 570	92	488 / 531	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK358991	2554	0.0	45 - 571	92	488 / 531	CUST_9768_PI390587928 CUST_19879_PI390587928 CUST_3649_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	0.0	956 - 1482	92	488 / 531	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	0.0	270 - 796	92	488 / 531	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK356951	852	0.0	58 - 586	91	484 / 530	CUST_4653_PI390587928 CUST_16539_PI390587928 CUST_2915_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK355094	3254	0.0	1035 - 1563	91	484 / 530	CUST_35832_PI390587928 CUST_4653_PI390587928 CUST_16539_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
AK252245.1	808	0.0	64 - 592	91	484 / 530	CUST_35758_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK252708.1	811	0.0	50 - 576	91	482 / 531	None	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45928
AK252634.1	2122	0.0	6 - 547	90	487 / 542	CUST_40537_PI390587928 CUST_5460_PI390587928 CUST_34592_PI390587928 CUST_7871_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
AK364796	4776	0.0	2380 - 2921	90	487 / 542	CUST_13700_PI390587928 CUST_28649_PI390587928 CUST_34592_PI390587928 CUST_3325_PI390587928 CUST_40537_PI390587928 CUST_34600_PI390587928 CUST_9769_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC_44795.1	1069	0.0	357 - 898	90	487 / 542	CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC_45463.1	379	1e-177	1 - 379	96	372 / 387	CUST_131_PI390587928 CUST_5626_PI390587928 CUST_5031_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928	ABC00626 ABC00859 ABC00934 ABC00965 ABC00966
AK252627.1	797	2e-166	44 - 546	88	465 / 531	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_44795.3	1330	2e-160	277 - 671	93	366 / 395	CUST_40537_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928
MLOC_44795.2	1219	2e-160	572 - 966	93	366 / 395	CUST_34592_PI390587928 CUST_34600_PI390587928 CUST_9769_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC_30227.1	929	9e-135	1 - 336	93	312 / 337	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00997 ABC01004 ABC36259 ABC45928
AK249421.1	610	6e-127	97 - 412	93	294 / 317	CUST_16539_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK249868.1	737	6e-67	44 - 244	90	183 / 204	CUST_19879_PI390587928 CUST_9765_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_40720.1	523	5e-93	1 - 254	91	234 / 257	None	ABC00308 ABC00589 ABC00594 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004
MLOC_21811.1	509	8e-91	249 - 508	90	234 / 260	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00838 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004