barSeed - Barley Seed Development Database

Probe CUST_35758_PI390587928

Source Contig U35_408

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35758_PI390587928	Hv_44K_v2	AAGGATGCATATGAGAATCATAGCACCGGCTATACATACTTCGTTTGCAGCTGGAAAAAA	734	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	12.969	8.501	1.407	0.743	0.421	0.395
Raw	308.843	337.588	45.835	40.795	6.399	6.717

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252245.1	808	2e-24	737 - 796	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
MLOC	MLOC_35548.1	315	3e-21	142 - 198	98	56 / 57	plus	ABC00594
JLOC1	JLOC1_22934.1	350	2e-21	142 - 198	98	56 / 57	plus
Harvest21	ABC00623	888	3e-25	717 - 776	100	60 / 60	plus
Harvest21	ABC49440	671	1e-23	76 - 132	100	57 / 57	minus
Harvest35	U35_408	1013	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_39935	744	6e-22	131 - 187	98	56 / 57	minus

Contig Sequence (1013 bp)

>U35_408 1013 Hv_44K_v2
AAGTCAAGTGTAGCCTGCCAAGCTAGCTATCGGCAACCCACCTAGCAGTTTACGTACCAC
CATGGCCCCAGCCGTGATGGCTTCGTCAGCCACCACCGTCGCCCCCTTCCAGGGGCTCAA
GTCCACCGCGGGCCTCCCCGTCAGCCGCCGCTCCGGCAGCGCCGGCCTCAGCAGCGTCAG
CAATGGCGGAAGGATCAGATGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGA
GACCCTGTCTTACTTGCCACCCCTCTCCACGGAGGCCCTCCTGAAGCAGGTCGACTACCT
GATCCGCTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTTGGCTTCGTCTTCCGTGA
GCACAACAGCTCCCCCGGGTACTACGACGGCCGATACTGGACAATGTGGAAGCTGCCTAT
GTTTGGGTGCACCGACGCCACACAGGTGCTCAACGAGGTGGAAGAGGTCAAGAAGGAGTA
CCCTGACGCCTACGTCCGCATCATCGGCTTTGACAACCTGCGGCAGGTGCAGTGCGTCAG
CTTCATCGCCTTCAGGCCACCGGGTTGCGAGGAGTCCGGCAAGGCATAAAGTGCAAGTTG
AAGTAACCGATATACATGCTATGTTAGTTCACATTGGTTGGTCGGCAGCTCTGCTTTCTC
AATTTTACTTCTCGTTCCAATCATATGTGAATATACGAGCATATGTATTTAAGCACCTAC
CAACGTAGGCCGAGAAGGATGCATATGAGAATCATAGCACCGGCTATACATACTTCGTTT
GCAGCTGGAAAAAAAAAAAAAAAAAGCCTATGTCTTGCATTTTTTTCTTCTCATGCATTT
TTTGCTCAATCATATGTTGTGTATTATCTAATGCAAAAATTGTTATGGGAAAAAAAAAAA
AAAAAATGCCTATGTCTTGCATTTTTTTCTTCTCATGCATTTTTTGCTCAATCATATNGT
TGTGTATTATCTAATGCANAAATTGTTATGGGATACCAAAAAAAAAAAAAAAA

Homology of Contig U35_408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g17600.1	176	1e-106	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g26391.1	176	5e-114
Arabidopsis v10	AT1G67090.1	180	6e-79	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180