barSeed - Barley Seed Development Database

Probe ABC00308

Source Contig ABC00308

barSeed

Links

Affymetrix Source Sequence (862 bp)

>ABC00308 862
TGCAGNAATTCGCACGAGGGCGGCATCCTCCTCTCTACAGTTAATACAGTACCATGGCCC
CCGCCGTGATGGCTTCGTCGGCTACCACCGTCGCACCCTTCCAGGGGCTCAAGTCCACAG
CCGGTCTCCCCGTCAGCCGCCGCTCCAGCGCCAGCTGCCTCGGCAGCGTCAGCAATGGCG
GAAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGTATCAAGAAGTTCGAGACCCTGT
CTTACTTGCCACCCCTCACCACGGAGGCCCTCCTGAAGCAGGTTGACTACCTGATCCGCT
CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTTGGCTTCGTCTTCCGTGAGCACAACA
GCTCCCCCGGGTACTACGACGGCCGATACTGGACAATGTGGAAGCTGCCTATGTTCGGAT
GCACCGACGCCACACAGGTGCTTAACGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACG
CTTACGTCCGTATCATCGGCTTCGACAACCTGCGGCAGGTGCAGTGCGTCAGCTTCATCG
CCTTCAGGCCACCGGGTTGCGAGGAGTCCGGCAAGGCATAAACTACGAGGTGAAACAATG
GCCTATGTCGTATGAAGGTCTTTTGTGAATTTCACTTTTGTCCACGACTCTGCTTTCCGA
CCAGAGCATAACTTTCTTCTCTATGATCTGTGTATGTACGAGCATAGGTTGTGGAGCATA
TATGCATATGTAAATTCTAGCACCCCCTACACATATCCAACACCTGTGTCATATTTATAA
TATACAACAAGCGGACCATTGTCTTGCTGTTAATTAAAAAAAAAAAAAAAAAAATTTAGC
ACTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK358991	2554	0.0	12 - 804	98	781 / 796	CUST_19879_PI390587928 CUST_3649_PI390587928 CUST_9768_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	0.0	237 - 1029	98	781 / 796	CUST_28144_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	0.0	923 - 1715	98	780 / 796	CUST_28144_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK252708.1	811	0.0	17 - 793	97	760 / 780	None	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45928
AK252627.1	797	0.0	11 - 741	95	720 / 758	CUST_19879_PI390587928 CUST_9765_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
AK249454.1	954	0.0	11 - 576	99	565 / 569	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK356951	852	0.0	55 - 586	96	509 / 532	CUST_16539_PI390587928 CUST_2915_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK355094	3254	0.0	1035 - 1566	96	512 / 535	CUST_4653_PI390587928 CUST_16539_PI390587928 CUST_35832_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
AK252245.1	808	0.0	61 - 592	95	507 / 532	CUST_35758_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK249868.1	737	9e-114	11 - 244	98	233 / 237	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_64679.1	900	0.0	101 - 632	92	492 / 534	CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_9745_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK249588.1	1172	0.0	382 - 911	92	490 / 532	CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	0.0	855 - 1384	92	490 / 532	CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	0.0	1637 - 2166	92	490 / 532	CUST_40537_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928 CUST_34592_PI390587928 CUST_38622_PI390587928 CUST_5031_PI390587928 CUST_40535_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	0.0	1399 - 1928	92	490 / 532	CUST_28839_PI390587928 CUST_40537_PI390587928 CUST_17538_PI390587928 CUST_8607_PI390587928 CUST_5626_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_5031_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
AK252634.1	2122	0.0	6 - 538	89	472 / 533	CUST_5460_PI390587928 CUST_40537_PI390587928 CUST_7871_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
AK364796	4776	0.0	2389 - 2921	89	472 / 533	CUST_34592_PI390587928 CUST_34600_PI390587928 CUST_9769_PI390587928 CUST_40537_PI390587928 CUST_28649_PI390587928 CUST_3325_PI390587928 CUST_13700_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC_44795.1	1069	0.0	357 - 889	89	472 / 533	CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
AK249082.1	978	4e-162	316 - 703	93	363 / 389	CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_5031_PI390587928 CUST_131_PI390587928 CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_34605_PI390587928 CUST_8607_PI390587928 CUST_5626_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK248995.1	983	4e-162	315 - 702	93	363 / 389	CUST_40537_PI390587928 CUST_34605_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK249421.1	610	2e-154	87 - 412	97	316 / 326	CUST_4653_PI390587928 CUST_16539_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
MLOC_30227.1	929	1e-151	1 - 336	96	321 / 336	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00997 ABC01004 ABC36259 ABC45928
MLOC_40720.1	523	3e-143	1 - 287	99	286 / 290	None	ABC00308 ABC00589 ABC00594 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004
MLOC_44795.3	1330	1e-142	277 - 662	90	349 / 386	CUST_40537_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC21951 ABC35392 ABC36259 ABC45928
MLOC_44795.2	1219	1e-142	572 - 957	90	349 / 386	CUST_40537_PI390587928 CUST_34600_PI390587928 CUST_9769_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
MLOC_46549.1	328	1e-106	116 - 328	99	212 / 213	CUST_28144_PI390587928	ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928
MLOC_21811.1	509	7e-105	246 - 509	93	245 / 264	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00838 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004
MLOC_48033.1	214	2e-100	1 - 214	98	209 / 214	None	ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928
MLOC_53661.1	335	7e-70	1 - 171	95	162 / 171	CUST_28144_PI390587928 CUST_9768_PI390587928	ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928