barSeed - Barley Seed Development Database

Probe ABC01926

Source Contig ABC01926

barSeed

Links

Affymetrix Source Sequence (1529 bp)

>ABC01926 1529
GCCGCACACCGCCGCCTCCTATCCCGCCACCCCGACGAGAAAAAGGGAGACCACGCCGCC
ATCGCCATCGCCAGTCGCCACCTCCCCCGCCTCGTTACCGCCGCCGGCACCCCCTCCCCC
CGCAAGCGCAAGAATGGGGAGCACCGACGAGACTGGAACTCCCTATGGCGAGTACACCTA
TGCTGAGCTGGAGAGGGAGTTGTACTGGCCATCCGAGAAGCTGAGAATCTCGGTTACTGG
AGCTGGTGGTTTCATTGGATCCCATATTGCTCGCCGCCTGAAGAGTGAGGGGCACTACAT
CATTGCCTCTGACTGGAAGAAGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTT
CCACCTTGCTGACCTCAGGGTCATGGACAACTGCCTTAAGGTCACCACCAACGTCGACCA
TGTCTTCAATCTTGCTGCTGATATGGGAGGCATGGGGTTCATTCAGTCCAACCACTCTGT
TATCATGTACAATAACACCATGATCAGTTTCAACATGCTTGAGGCCGGGCGTATCAACGG
TGTGAAGAGGTTCTTCTATGCCTCGAGCGCATGCATCTACCCTGAATTCAAACAGCTTGA
GACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGCCACAAGATGCCTATGG
CTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGACATTGA
GTGCCGTATTGGCCGTTTTCACAACATTTATGGTCCCTTTGGAACATGGAAAGGCGGTCG
CGAGAAGGCACCAGCTGCCTTCTGTAGAAAGGCTCAGACCTCCACCGAACGGTTTGAGAT
GTGGGGTGATGGTCTACAGACTCGATCGTTCACTTTTATCGACGAGTGCGTCGAGGGTGT
TCTGAGATTGACAAAGTCAGACTTCTGCGAGCCCGTGAACATTGGAAGTGATGAAATGGT
GAGCATGAACGAGATGGCTGAGATTGTTCTCGGCTTCGAGGACAAGAAGCTACCCATCCA
CCACATCCCTGGTCCAGAGGGTGTCCGCGGCCGCAACTCTGACAACACCCTCATCAAGGA
GAAGCTTGGCTGGGCCCCCACAATGAAGCTCAAGGATGGCCTAAGGTTCACCTACTTCTG
GATCAAGGAGCAGATCGAGAAGGAGAGGACCGAGGGGAAGGACGTCGCCCGGTACGGATC
ATCCAAGGTGGTGTCCACACAGGCACCGGTGCAGCTGGGCTCCCTCCGCGCGGCTGACGG
CAAGGAGTAAACAACTATGCATATCAACCCCAGGCCTATTATGCCACTGCCCAATTGCCC
ACCGATCGGATCCTTCGTTGCGAAAACACTTGAGAATTGCACAGCCTGCCCTGCCTACCC
CATGTGTGATTCAGCAGATTCTAGTGCTCCTGTTCATTGTCACCCCCATTAATTATTATC
ATCGTGTCAACAGAATTCCTCGTACATCACACTTTTGATTGGATGCACAATAAAATTCCT
TTTTCTCTTGTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_44090.1	1749	0.0	235 - 1749	99	1514 / 1515	CUST_7871_PI390587928 CUST_5460_PI390587928	ABC01926 ABC01929 ABC01931
AK361091	1571	0.0	17 - 1530	99	1513 / 1515	CUST_7871_PI390587928 CUST_5460_PI390587928	ABC01926 ABC01929 ABC01931
AK252634.1	2122	0.0	607 - 2121	99	1512 / 1515	CUST_7871_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_5460_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
MLOC_44090.2	1633	0.0	867 - 1610	99	743 / 744	CUST_7871_PI390587928 CUST_5460_PI390587928	ABC01926 ABC01929 ABC01931
MLOC_56703.2	1461	0.0	121 - 1223	84	930 / 1109	CUST_34608_PI390587928 CUST_10144_PI390587928	ABC01926 ABC01927 ABC01929 ABC01931
MLOC_56703.1	1455	0.0	240 - 1342	84	929 / 1109	CUST_34608_PI390587928	ABC01926 ABC01927 ABC01929 ABC01931
MLOC_10328.1	312	1e-64	1 - 312	81	253 / 312	None	ABC01926 ABC01929 ABC01931