barSeed - Barley Seed Development Database

Probe ABC01931

Source Contig ABC01931

barSeed

Links

Affymetrix Source Sequence (1481 bp)

>ABC01931 1481
TTTCCTCTCCGGTACCCAGAATATTCTGGGGGAGAAAACGGAAAAAACAGTCCTCCAGCA
GCTCCCCGATTCCCTCTGTCCCTCACAGAATGGCGCTCAACGAGAAGTACACGTACGCCG
AGTTGGAGAAGGAGCCGTATTGGCCATTCGAGAAGCTGCGGATCTCGATTACAGGAGCTG
GCGGCTTCATAGCCTCCCACATTGCAAAGCGCCTCAAGGGCGAGGGGCACTACATCATCG
CCTCTGACTGGAAGAAGAACGAACACATGGAAGAGGATATGTTCTGCCATGAGTTTCACC
TTGCTGATCTGAGGGTCATGGACAACTGCCTCAAGGTAACCACTGGGGTTGACCATGTTT
TCAATCTGGCAGCTGATATGGGAGGGATGGGCTTCATCCAGTCCAACCATTCTGTCATCA
TGTACAACAACACTATGATCAGCTTTAACATGCTTGAGGCTGGTAGAATCAATGGTGTCA
AGAGGTTCTTTTATGCCTCGAGTGCTTGCATCTACCCTGAATTTAAGCAGCTGGAAACTG
TAGTTAGCTTGAAGGAGGCGGATGCTTGGCCGGCAGAGCCTCAAGATGCCTATGGCTTGG
AGAAACTTGCCACTGAGGAATTGTGCAAGCACTACACAAAGGACTTTGACATTGAGTGCC
GGGTTGGTCGCTTTCACAATATATATGGTCCATATGGGACATGGAAGGGTGGAAGGGAGA
AGGCACCTGCTGCTTTCTGCAGAAAGGCTCTAACCTCCACTGACTGGTTTGAGATGTGGG
GAGATGGTCTGCAGACTAGATCCTTCACATTTATTGATGAATGTGTGGAGGGTGTCCTCA
GGCTCACAAAGTCTGATTTCCGCGAGCCTGTAAACATCGGGAGTGATGAAATGGTGAGCA
TGAACGAGATGGCTGAGATAGTCCTGGGCTTCGAGAACAAGCAGCTGCCCATCCACCACA
TCCCTGGCCCCGAGGGCGTCCGTGGCCGTAACTCTGACAACACACTCATCAAGGAGAAGC
TTGGCTGGGCTCCAACCATGAGGCTGAAGGATGGGCTGAGGATCACGTATTTTTGGATCA
AGGAGCAGCTGGAGAAGGAAAAATCCGAAGGCGCAGACGTGTCGGCATACGGATCATCCA
AGGTCTGCACCACGCAGGCACCGGTCCAGCTTGGCTCCCTCCGCGCCGCAGATGGCAAGG
AGTGAACACTCTCGCCTAGGCAAGGAGATCAGTTGTTTGTCAGTTGTCACACCATTTCTT
GATTCAGTCTGAACTTTCATATACTGCGTGAGATTTGTAGCTTTTTGTGCTGTTGTAAAC
GGGAATAACTGCTTGGCGCAAGAGGATGTTATTAATGTTAAACATTTTATTTGTACATGT
AAAATCCGGTCAGTTCGTCTTAATGACAACAATGAAATAATATTTTGTTACTTTGTGAGA
AAAAAAAAAAAAAAAATTTGGTCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56703.2	1461	0.0	16 - 1445	100	1430 / 1430	CUST_10144_PI390587928 CUST_34608_PI390587928	ABC01926 ABC01927 ABC01929 ABC01931
MLOC_56703.1	1455	0.0	8 - 1439	99	1428 / 1440	CUST_34608_PI390587928	ABC01926 ABC01927 ABC01929 ABC01931
AK252634.1	2122	0.0	777 - 1879	84	930 / 1109	CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_5460_PI390587928 CUST_7871_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
MLOC_44090.1	1749	0.0	405 - 1507	84	930 / 1109	CUST_5460_PI390587928 CUST_7871_PI390587928	ABC01926 ABC01929 ABC01931
AK361091	1571	0.0	187 - 1288	84	929 / 1109	CUST_5460_PI390587928 CUST_7871_PI390587928	ABC01926 ABC01929 ABC01931
MLOC_22799.8	1940	0.0	40 - 610	90	514 / 572	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931
MLOC_22799.4	1915	0.0	170 - 738	90	512 / 570	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.1	2113	0.0	235 - 813	89	514 / 580	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.7	1780	0.0	63 - 639	89	512 / 578	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.2	2156	0.0	198 - 653	92	421 / 457	None	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_10328.1	312	5e-138	1 - 312	95	297 / 312	None	ABC01926 ABC01929 ABC01931
MLOC_44090.2	1633	2e-131	877 - 1368	84	416 / 495	CUST_5460_PI390587928 CUST_7871_PI390587928	ABC01926 ABC01929 ABC01931
MLOC_22799.6	1967	2e-63	78 - 249	92	159 / 172	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.13	1218	1e-124	217 - 576	89	323 / 361	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931
MLOC_22799.5	1876	2e-63	170 - 341	92	159 / 172	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.12	1971	1e-114	272 - 641	88	325 / 371	CUST_7607_PI390587928	ABC01927 ABC01931 ABC48945
MLOC_22799.10	2060	2e-113	570 - 937	88	323 / 369	CUST_7607_PI390587928	ABC01927 ABC01931 ABC48945
MLOC_22799.11	2107	2e-113	548 - 915	88	323 / 369	CUST_7607_PI390587928	ABC01927 ABC01931 ABC48945
MLOC_22799.3	1858	2e-63	198 - 369	92	159 / 172	CUST_7607_PI390587928	ABC01927 ABC01929 ABC01931 ABC48945
MLOC_22799.14	1816	4e-89	1480 - 1734	91	232 / 256	None	ABC01927 ABC01931 ABC48945
MLOC_22799.9	2188	4e-89	623 - 877	91	232 / 256	None	ABC01927 ABC01931 ABC48945