barSeed - Barley Seed Development Database

Probe CUST_10144_PI390587928

Source Contig U35_33052

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10144_PI390587928	Hv_44K_v2	AACACTCTCGCCTAGGCAAGGGGATCAGTTGTTTGTCAGTTGTCACACCATTTCTTGATT	203	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.480	3.918	1.342	0.642	0.210	0.278
Raw	5290.673	7656.373	2138.600	1705.888	186.250	274.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56703.2	1461	7e-23	1220 - 1279	98	59 / 60	plus	ABC01926 ABC01927 ABC01929 ABC01931
Harvest21	ABC01931	1481	1e-23	1205 - 1264	98	59 / 60	plus	ABC01931
Harvest35	U35_33052	755	3e-25	204 - 263	100	60 / 60	minus
Harvest35	U35_192	1455	1e-23	1201 - 1260	98	59 / 60	plus

Contig Sequence (755 bp)

>U35_33052 755 Hv_44K_v2
CCCTCCAGATGATGCTCGAGCGGCCGCTCTCACAACGTAACAAAATATTATTTCATTGTT
GTCATTAAGACGAACTGACCGGATTTTACATGTACAAATAAAATGTTTAACATTAATAAC
ATCCTCTTGCGCCAAGCAGTTATTCCCGTTTACAACAGCACAAAAAGCTACAAATCTCAC
GCAGTATATGAAAGTTCAGACTGAATCAAGAAATGGTGTGACAACTGACAAACAACTGAT
CCCCTTGCCTAGGCGAGAGTGTTCACTCCTTGCCATCTGCGGCGCGGAGGAAGCCAAGCT
GGACCGGTGCCTGCGTGGTGCAGACCTTGGATGATCCATATGCCGACACGTCTGCGCCTT
CGAATTTTTCCTTCTCCAGCTGCTCCTTGATCCAAAAATACGTGATCCTCAGCCCAGCGG
CCGCTGGAGGAGGCCAGGATCATGAAAAACGTTCCTGGATGGAAGGTAGGCGAAAGCGTG
TACAATTCCGGAAAGTGGATGCCCCCTGCCACCGGTGAGCTGCGCCCTGAGGTTTGGTAA
GGTTCAAGGACTTGTTGCTTGAGCCCATCAAGGATGGCACCGTGTCTTCATGGTATGAAT
AAGGCTTTCAGACCTGCATACCCCAAAATTTGCTACGAGGGACACATACTTAGCATTTGT
CATGTATTTCTTCTGTTGACAAGATTTGTGTTGACGAAATCTGGCTGGCTAATAATTGGA
CATACCAAGCCAACTTTGGTCTTTATATGAGTCAT

Homology of Contig U35_33052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None