barSeed - Barley Seed Development Database

Probe ABC00966

Source Contig ABC00966

barSeed

Links

Affymetrix Source Sequence (569 bp)

>ABC00966 569
TTCATCGCCTTCAAGCCACCAGGCTGCTAGGAGTCCGACACCCCCCCCACAGCTCACTGA
CGATGGGCCACATATAAAGAGCCATTGCAGTTTTGTCAACTCTGACATTGCTTTGGGTTT
TCCTTTTCCATTATCTTTCTTATTTGTTCCTAAAAATGTGTGTATGCCCATGTTCATGTA
CCAACATGGCTCGAGAAAGCATGCTCGTATGTGAATGCTATCGGTGGCTATGTATATGCA
CATGCACATAATATTATACAATCTGTCGACTATGTAATATGTATTCGAGTAATTAATGAG
AAAAAAAAACCTCGTGCCGAATTCGGCACGAGGCATAATTTTGTTCCCGTCATCGCCTTT
TGTCTACATCCTTTTGTTTTGCTGGGTGCTAAGGTAAAACAAGCTGTCCTACGGGACGGT
ACATCCCTTTGCCAATAAAGAACTGTACCCAGTACTGATGTATGTATGTCCTACGTGACG
GTACATCCATACTGCTGTGCCTTGCATATGATTCCAGTCTGTCTCTCTGAAATACTTGGA
AAGAAACTGTACACAAGGACAGTTCAATG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_64679.1	900	4e-140	583 - 885	96	292 / 303	CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_34592_PI390587928 CUST_9745_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK248995.1	983	7e-138	653 - 954	96	291 / 303	CUST_34584_PI390587928 CUST_34605_PI390587928 CUST_38622_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
AK249082.1	978	1e-100	654 - 916	92	242 / 263	CUST_5031_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_8607_PI390587928 CUST_131_PI390587928 CUST_34605_PI390587928 CUST_5626_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK249588.1	1172	1e-100	862 - 1124	92	242 / 263	CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_34584_PI390587928 CUST_5031_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	1e-100	1335 - 1597	92	242 / 263	CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	1e-100	2117 - 2379	92	242 / 263	CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_5626_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	1e-100	1186 - 1448	92	242 / 263	CUST_38622_PI390587928 CUST_5031_PI390587928 CUST_40535_PI390587928 CUST_8607_PI390587928 CUST_5626_PI390587928 CUST_131_PI390587928 CUST_28839_PI390587928 CUST_17538_PI390587928 CUST_34584_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
AK354346	3493	6e-89	3316 - 3493	100	178 / 178	None	ABC00966 ABC04975
MLOC_45463.1	379	2e-58	223 - 379	93	146 / 157	CUST_5626_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928	ABC00626 ABC00859 ABC00934 ABC00965 ABC00966