- Probe CUST_5031_PI390587928
- Source Contig U35_520
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5031_PI390587928 | Hv_44K_v2 | GCTGTCGGTGGCTATGTATATGCACGTACGCATAATATTATACAATAATATGTCAACTAT | 291 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.984 | 3.639 | 1.183 | 0.961 | 0.235 | 0.401 |
| Raw | 5938.367 | 9060.310 | 2416.500 | 3433.050 | 259.351 | 502.924 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249082.1 | 978 | 2e-24 | 871 - 930 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK249588.1 | 1172 | 2e-24 | 1079 - 1138 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK369652 | 2395 | 2e-24 | 2334 - 2393 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK360618 | 4810 | 2e-24 | 1172 - 1231 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601 |
| MLOC | MLOC_45463.1 | 379 | 2e-24 | 209 - 268 | 100 | 60 / 60 | minus | ABC00626 ABC00859 ABC00934 ABC00965 ABC00966 |
| MLOC | AK250591.1 | 1609 | 2e-23 | 1552 - 1609 | 100 | 58 / 58 | plus | ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| JLOC1 | JLOC1_29518.1 | 404 | 8e-25 | 234 - 293 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC51375 | 377 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC45276 | 485 | 3e-25 | 394 - 453 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26867 | 538 | 3e-25 | 196 - 255 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01011 | 417 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00934 | 492 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus | ABC00934 |
| Harvest21 | ABC00859 | 1211 | 3e-25 | 894 - 953 | 100 | 60 / 60 | plus | ABC00859 |
| Harvest21 | ABC28290 | 374 | 2e-22 | 320 - 374 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_45894 | 485 | 3e-25 | 394 - 453 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28159 | 538 | 3e-25 | 196 - 255 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_520 | 417 | 3e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_500 | 888 | 3e-25 | 777 - 836 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50753 | 858 | 1e-24 | 13 - 71 | 100 | 59 / 59 | minus | |
| Harvest35 | U35_349 | 1114 | 5e-23 | 772 - 827 | 100 | 56 / 56 | plus |
Contig Sequence (417 bp)
>U35_520 417 Hv_44K_v2 GCACGAGGGCCTCCCTCTAGCAAGCTATATACCTACATAGTACAGCTATGGCCCCCACCG TGATGGCCTCGTCGGCCACCTCCGTCGCTCCTTTCCAGGGGCTCAAGTCCGGCAAGGCAT AAACAGCTCACTGACGATGGGCCACATATAAAGTGCCATTGCAGTTTTGTCAACTCTGAC ATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATTTGTTCCTAAGAATATGTGTAT GTCCATGTTCATGTACCAACATGGCTCGAGAAAACATGCTTGTATGTGAATGCTGTCGGT GGCTATGTATATGCACGTACGCATAATATTATACAATAATATGTCAACTATATACGTTTT AATAAAAAAAAAAAAAAAAAAAAATCTCCAGCACCGTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_520 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |