barSeed - Barley Seed Development Database

Probe ABC00446

Source Contig ABC00446

barSeed

Links

Affymetrix Source Sequence (1831 bp)

>ABC00446 1831
CACAAACCCAAGCAGTGATCACGCCGCCTCCTTCCCCGATCGATCGCCGGCCACATAAAT
AAGCCGGCGCACCACCTGCTCCTTTCCGCCTAGCAGCAGCAGCAGCATCGTCAACAATGG
CCGCCCATGCAGCTCTCGCCGCCACCCGCATCCCCGCCAGTGCCCGTCTGCACAGCAAGG
CCGCCTCCAGGCAGAGGGTCGACTTCGCCGACTTCTCCGGTCTGAGGCCTGGGTCGTGCT
CCGTGAGCGCCGCCGCCAGGGAGGCCTCCTTCTCCGATGTCCTCGGCGCGCAGCTCGTCG
CCAGGGCTTCCGGCGAGAACGCCGTGAGGGCGCCGGCGGAGGCGAAGCTGAAGGTGGCCA
TCAACGGGTTCGGCCGCATCGGGCGCAACTTCCTCCGGTGCTGGCACGGACGCGAGAACT
CCCCGCTCGAGGTCATCGTCATCAACGACAGCGGAGGCGTCAGGAACGCGTCTCACCTGC
TCAAGTACGACTCGATGCTGGGCACCTTCAAGGCGGACGTGAAGATCGTGGACAACGAGA
CCATCAGCGTCGACGGCAAGAACATCCAGGTCGTCTCCAACAGGGACCCCCTCAAGCTGC
CATGGGCCGAGCTCGGCATCGACATCGTCATCGAGGGTACCGGAGTTTTCGTTGACGGCC
CCGGCGCCGGGAAGCATCTCCAGGCCGGAGCCAAGAAGGTCATCATCACTGCTCCGGCCA
AGGGTGCCGACATCCCCACCTACGTCGTCGGTGTCAACGAGGGCGACTACGACCATGATG
TTGCCAACATCATCAGCAACGCTTCTTGCACCACCAACTGCCTCGCGCCATTCGCCAAGG
TCCTGGACGAGGAGTTCGGAATCGTGAAGGGAACCATGACCACGACGCACTCGTACACGG
GCGACCAGAGGCTGCTGGACGCGTCCCACCGCGACCTGCGGAGGGCGAGGGCGGCGGCGC
TGAACATCGTGCCGACGAGCACGGGAGCCGCCAAGGCCGTCTCCCTGGTGCTGCCACAGC
TCAAGGGCAAGCTCAACGGCATCGCGCTCCGCGTGCCCACGCCCAACGTCTCCGTGGTGG
ACCTCGTCATCAACACCGTCAAGACCGGCATCACCGCCGACGACGTGAACGCGGCGTTCC
GCAAGGCCGCCGACGGGCCGCTCAAGGGCATCCTCGACGTCTGCGACGAGCCGCTCGTGT
CCGTCGACTTCCGCTGCTCAGACGTGTCCACCAGCATCGACGCCTCCCTCACCATGGTCA
TGGGCGACGACATGGTCAAGGTCGTCGCCTGGTACGACAACGAGTGGGGCTACAGCCAGC
GCGTGGTTGATCTGGCGCACCTGGTGGCGGCCAAGTGGCCGGGCGCCGGGACCGGCGGCA
GCGGCGACCCCCTGGAGGACTACTGCAAGACCGACCCCAACGCCGTGGAGTGCAAGGTGT
TCGACGAGTGAACGGAGCTCGGAGCTGGTTGCTGGCTTGACCGGTCGAGGCTGATCAGAA
AACGCAACGAAGCAACTACAGTACATTATTATCCTCTATCTATAGCCTATAATATGGACC
TGCTGGATTGTGTTTCATTCGTTTCGAGATTGCTCGCCGAGCTTGCGGCTTGGTGCTCTA
TATATCAGACAGGATTCGGGCAGAATAAATTGACCCTTCTTCTGTGAGCTGTACTGAACT
CGATATATTCAGATATGTCAGACTTTCTCTTGGGACTTTAAAAAAAAAAAAAAAAATCTT
GTGCCAAGTTTTGTATAACATGCGCTTTGAGATGCTTGGATCGAATGTCTAAAGATCGTG
TAAGATGGATGCTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_52515.2	1971	0.0	1 - 1671	100	1671 / 1671	None	ABC00446 ABC00888 ABC26789
AK250591.1	1609	0.0	7 - 804	100	798 / 798	CUST_5031_PI390587928 CUST_34592_PI390587928 CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC_52515.3	801	0.0	99 - 801	100	703 / 703	None	ABC00446
MLOC_52515.1	2184	4e-80	820 - 982	100	163 / 163	CUST_7906_PI390587928	ABC00446 ABC00888 ABC26789
MLOC_44511.1	1815	0.0	550 - 1528	82	810 / 989	CUST_14178_PI390587928 CUST_2035_PI390587928	ABC00446 ABC00888 ABC50668
AK248329.1	1657	0.0	373 - 1351	82	809 / 989	CUST_7603_PI390587928 CUST_35724_PI390587928 CUST_14178_PI390587928 CUST_2035_PI390587928	ABC00446 ABC00888 ABC50668
AK371539	1230	2e-127	383 - 905	83	434 / 526	CUST_7603_PI390587928 CUST_35724_PI390587928 CUST_14178_PI390587928 CUST_2035_PI390587928	ABC00446 ABC00888 ABC50668