barSeed - Barley Seed Development Database

Probe CUST_7603_PI390587928

Source Contig U35_242

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7603_PI390587928	Hv_44K_v2	AGGGCTTCCTGCAAAGGAAGTCTCAACGCTGTGCATCTGTAATACTCGTATATACTACTA	845	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.753	6.788	1.478	0.601	0.175	0.148
Raw	2733.950	3502.224	645.997	442.368	41.380	39.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371539	1230	2e-23	1145 - 1202	100	58 / 58	plus	ABC00446 ABC00888 ABC50668
MLOC	AK248329.1	1657	2e-23	1591 - 1648	100	58 / 58	plus	ABC00446 ABC00888 ABC50668
MLOC	AK373732	2269	9e-22	232 - 286	100	55 / 55	plus	ABC00888 ABC02562 ABC02564 ABC50668
JLOC1	JLOC1_28849.1	1755	1e-23	1531 - 1588	100	58 / 58	plus
Harvest21	ABC26913	750	3e-25	691 - 750	100	60 / 60	plus
Harvest21	ABC00888	1536	4e-24	1417 - 1474	100	58 / 58	plus	ABC00888
Harvest35	U35_242	905	3e-25	846 - 905	100	60 / 60	plus
Harvest35	U35_32724	693	4e-24	588 - 645	100	58 / 58	minus
Harvest35	U35_427	1575	4e-24	1434 - 1491	100	58 / 58	plus
Harvest35	U35_35493	421	6e-22	88 - 144	98	57 / 58	minus

Contig Sequence (905 bp)

>U35_242 905 Hv_44K_v2
GCGTCGCCCATGCTCTCCACGGCCATGGCGCCACTCCAGGGGGGCATGCTGGAGTTCTCC
GGGCTGAGGAGCTCGTCGTCGCTGCCGCTCCGGCGGAATGCCACCTCCGACGACTTCATG
TCCGCCGTCTCCTTCAGGACATACGCGGTGAGCACGAGCGGCGGGTCGCGGAAGGCGCCG
ACGGAGGCGAAGCTCAAGGTGGCGATCAACGGGTTCGGGCGCATCGGGCGCAACTTCCGG
TGCCCGCGCCGCCGCCCTCAACATAGTGCCGACCTCCACCGGCGCGGCCAAGGCCGTGGC
GCTGGTGCTCCCCAACCTCAAGGGCAAGCTCAACGGGATCGCGCTCCGGGTGCCCACCCC
CAACGTGTCCGTCGTCGACCTCGTGGTGCAGGTCTCCAAGAAAACCCTCGCCGAGGAGGT
GAACCAGGCGTTCCGCGACGCCGCCGCCAACGAGCTCAAGGGCATCCTCGACGTCTGCGA
CGAGCCCCTCGTGTCCGTCGACTTCAGGTGCTCCGACGTCTCCTCCACCATCGACGCGTC
GCTCAGCATGGTCATGGGAGACGACATGGTCAAGGTCATTGCATGGTACGACAACGAGTG
GGGTTACTCCCAGAGGGTCGTCGACCTCGCCGACATCGTCGCCAACCAATGGAAGTGAAC
GCCCCCCACAGCGGCATTGCCCTGTCAAGTGACTCCTCTCGAAATTTTCCCCAGCCGTCG
TCACGGATGATCGATTCTTTGTAATGAGAATTCAAAGTATCGAGCTCCCAACACCTTCTT
CCTTTTTCTTTCTTTTCTTCTTTTCTCTTTCTCTGATTTTTCAGTGTCCAGACACGGATT
ATAATAGGGCTTCCTGCAAAGGAAGTCTCAACGCTGTGCATCTGTAATACTCGTATATAC
TACTA

Homology of Contig U35_242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38600.3	403	4e-73	protein\|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g12330.1	404	2e-75
Arabidopsis v10	AT1G12900.1	399	2e-71	\| Symbols: GAPA-2 \| glyceraldehyde 3-phosphate dehydrogenase A subunit 2 \| chr1:4392634-4394283 REVERSE LENGTH=399