- Probe CUST_38622_PI390587928
- Source Contig U35_179
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38622_PI390587928 | Hv_44K_v2 | AATGTCAGAGTTGACAAAACTGCAATGGCACTTTATATGTGGCCCATCGTCAGTGAGCTG | 264 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.838 | 3.920 | 1.612 | 0.985 | 0.744 | 0.723 |
| Raw | 64.278 | 63.352 | 20.860 | 18.036 | 3.106 | 4.426 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249082.1 | 978 | 2e-24 | 703 - 762 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK249588.1 | 1172 | 2e-24 | 911 - 970 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK248995.1 | 983 | 2e-24 | 702 - 761 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 |
| MLOC | AK250591.1 | 1609 | 2e-24 | 1384 - 1443 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK369652 | 2395 | 2e-24 | 2166 - 2225 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601 |
| MLOC | AK360618 | 4810 | 2e-24 | 1340 - 1399 | 100 | 60 / 60 | plus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601 |
| MLOC | MLOC_64679.1 | 900 | 2e-24 | 632 - 691 | 100 | 60 / 60 | minus | ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 |
| JLOC1 | JLOC1_42494.1 | 1145 | 8e-25 | 750 - 809 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC50496 | 360 | 3e-25 | 194 - 253 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49726 | 283 | 3e-25 | 147 - 206 | 100 | 60 / 60 | plus | ABC49726 |
| Harvest21 | ABC49600 | 297 | 3e-25 | 32 - 91 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40495 | 559 | 3e-25 | 386 - 445 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC28290 | 374 | 3e-25 | 153 - 212 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC26867 | 538 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01011 | 417 | 3e-25 | 124 - 183 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00965 | 505 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus | ABC00965 |
| Harvest21 | ABC00954 | 894 | 3e-25 | 133 - 192 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00934 | 492 | 3e-25 | 221 - 280 | 100 | 60 / 60 | plus | ABC00934 |
| Harvest21 | ABC00885 | 927 | 3e-25 | 601 - 660 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00859 | 1211 | 3e-25 | 726 - 785 | 100 | 60 / 60 | minus | ABC00859 |
| Harvest21 | ABC00814 | 924 | 3e-25 | 549 - 608 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00626 | 741 | 3e-25 | 545 - 604 | 100 | 60 / 60 | minus | ABC00626 |
| Harvest21 | ABC00453 | 324 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00346 | 283 | 3e-25 | 97 - 156 | 100 | 60 / 60 | minus | ABC00346 |
| Harvest21 | ABC51375 | 377 | 4e-24 | 196 - 253 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC45874 | 266 | 1e-23 | 93 - 149 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC35392 | 424 | 1e-23 | 105 - 164 | 98 | 59 / 60 | plus | ABC35392 |
| Harvest21 | ABC00966 | 569 | 1e-23 | 50 - 109 | 98 | 59 / 60 | minus | ABC00966 |
| Harvest21 | ABC52601 | 419 | 2e-22 | 289 - 346 | 98 | 57 / 58 | minus | ABC52601 |
| Harvest35 | U35_50753 | 858 | 3e-25 | 180 - 239 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43614 | 559 | 3e-25 | 386 - 445 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_28159 | 538 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_520 | 417 | 3e-25 | 124 - 183 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_500 | 888 | 3e-25 | 609 - 668 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_364 | 947 | 3e-25 | 601 - 660 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_349 | 1114 | 3e-25 | 604 - 663 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_248 | 772 | 3e-25 | 654 - 713 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_179 | 324 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28005 | 366 | 1e-23 | 61 - 120 | 98 | 59 / 60 | plus |
Contig Sequence (324 bp)
>U35_179 324 Hv_44K_v2 TTCAGCAAGGTTGGGTTCATCTTCCGTGAGCACAACGCATCTCCTGGGTACTACGATGGC CGGTACTGGACAATGTGGAAGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTC AACGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCGTATGTCCGCATCATCGGATTC GACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCAGGCTGCGAG GAGTCCGGCAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCACTTTAT ATGTGGCCCATCGTCAGTGAGCTG
Homology of Contig U35_179 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g08800.1 | 175 | 3e-56 | |
| Arabidopsis v10 | None |