barSeed - Barley Seed Development Database

Probe ABC52601

Source Contig ABC52601

barSeed

Links

Affymetrix Source Sequence (419 bp)

>ABC52601 419
GTACATGAACATGGACATACCCATATTTTTAGGGCCAAATAAGAAAGATAAATGGGGAAG
GAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCCCTTTATATGTGGCCCAT
CGTCAGTGAGCCCTCGTGCCGAATTCGGCCCGAGGAAGGACTATGAAAAAGTTGGTGCTG
AGTTCGACCATGGTGAGGATGGTTACGAGGGTGATGAGTACTAAAGCCTGCCTCCTGGTG
CTTTCCCAAGGGGTACTACTGCTATCCTATGATCTGCCCAAGCGGCTTTATCTGTTATCT
GTCTGTTTGAAAGTTTGCTTTGTGGGGTTTGTTTTACAACCTGTTGTGTTGTAAAAACAT
ATTGGTCTGTTTGAACCTAATGTTATGGGCATGCGGTTATTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_7079.1	1740	5e-88	1540 - 1739	96	192 / 200	CUST_20826_PI390587928 CUST_614_PI390587928 CUST_636_PI390587928	ABC00127 ABC00333 ABC00803 ABC00902 ABC48258 ABC50944 ABC52601
AK249082.1	978	6e-53	705 - 835	95	125 / 131	CUST_5031_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_5626_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928 CUST_34605_PI390587928 CUST_34584_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK249588.1	1172	6e-53	913 - 1043	95	125 / 131	CUST_34592_PI390587928 CUST_5626_PI390587928 CUST_5031_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	6e-53	1386 - 1516	95	125 / 131	CUST_5031_PI390587928 CUST_40537_PI390587928 CUST_34592_PI390587928 CUST_5626_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_8607_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	6e-53	2168 - 2298	95	125 / 131	CUST_38622_PI390587928 CUST_34584_PI390587928 CUST_131_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928 CUST_34592_PI390587928 CUST_40537_PI390587928 CUST_5031_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	6e-53	1267 - 1397	95	125 / 131	CUST_131_PI390587928 CUST_34584_PI390587928 CUST_38622_PI390587928 CUST_8607_PI390587928 CUST_40535_PI390587928 CUST_5031_PI390587928 CUST_17538_PI390587928 CUST_40537_PI390587928 CUST_28839_PI390587928 CUST_34592_PI390587928 CUST_5626_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601