barSeed - Barley Seed Development Database

Probe ABC00938

Source Contig ABC00938

barSeed

Links

Affymetrix Source Sequence (692 bp)

>ABC00938 692
ATCAGGTAGTCGACCTGCTTAAGGAGGGCCTCCGTGCTGAGTGGTGGCAAGTAAGACAGG
GTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCATGCACCTGATCCTTCCACCG
TTGCTGACGCTGCCGAGGCTAGCACCGTTCGAGCGGCGGCTGACGGGGAGGCCGGCGGCT
CGAATGGATGGAGCGAAGTGAGACTTGCCCAGTCTGTGACCAGATAACTTTGATAGATGA
GATGTACGAATAGCATGTTGACCCCGGCGGATCCTCTCTAGGAGCTCTTGGGTGCCTACC
GAGGAGGTTTAGTACTAGTCCTTTTTTCTATGGGGGAAGTAAAACCAGCAACTATTCTGC
TCCTAATATGATAGTATGATCTGGTGGAGGTGCTACTGGAATGCATCTTGGGAGAACAAA
ATGGGAAATAATGAAAGGAAGGAAACTGGAAGAAATATGCTCTAAAAAAACATCCATCTC
TGCGTTTATACTAGCATTTGTGTCAAGCTGTGGCTGTTTATGGTAACAGGAGGATTAGCA
GGCTGCATCTGCAATATGCACTTCATACTAGTCGAAAACTCTTGAATCTAGCTCTCTTTT
TCATGCTTTCTGGATTTTGGCTCGCGTTTTCGGATTGAGCGTCTGTATAAACCATCACAT
ACTAGATATAGGGTGACAGCAAGTAAAAAGAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_15337.2	1798	0.0	958 - 1472	99	509 / 515	CUST_3847_PI390587928	ABC00938
MLOC_15337.3	2207	0.0	865 - 1379	99	509 / 515	CUST_3847_PI390587928	ABC00938
AK249588.1	1172	7e-89	446 - 623	100	178 / 178	CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_40537_PI390587928 CUST_8607_PI390587928 CUST_5031_PI390587928 CUST_38622_PI390587928 CUST_131_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK250591.1	1609	7e-89	919 - 1096	100	178 / 178	CUST_34592_PI390587928 CUST_34584_PI390587928 CUST_40537_PI390587928 CUST_8607_PI390587928 CUST_5031_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928 CUST_40535_PI390587928 CUST_5626_PI390587928	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK369652	2395	7e-89	1701 - 1878	100	178 / 178	CUST_5626_PI390587928 CUST_40535_PI390587928 CUST_38622_PI390587928 CUST_131_PI390587928 CUST_5031_PI390587928 CUST_8607_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
AK360618	4810	7e-89	1687 - 1864	100	178 / 178	CUST_28839_PI390587928 CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_8607_PI390587928 CUST_17538_PI390587928 CUST_5031_PI390587928 CUST_5626_PI390587928 CUST_40535_PI390587928 CUST_131_PI390587928 CUST_38622_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC_64679.1	900	7e-84	167 - 344	98	175 / 178	CUST_40537_PI390587928 CUST_34584_PI390587928 CUST_34592_PI390587928 CUST_38622_PI390587928 CUST_9745_PI390587928	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
MLOC_15337.4	891	7e-69	744 - 891	99	146 / 148	None	ABC00938
MLOC_40720.1	523	6e-60	16 - 188	91	160 / 176	None	ABC00308 ABC00589 ABC00594 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004
AK356951	852	7e-59	122 - 299	90	160 / 178	CUST_2915_PI390587928 CUST_16539_PI390587928 CUST_4653_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK355094	3254	7e-59	1322 - 1499	90	160 / 178	CUST_4653_PI390587928 CUST_16539_PI390587928 CUST_35832_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
AK252245.1	808	7e-59	128 - 305	90	160 / 178	CUST_35758_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928
AK249454.1	954	3e-58	110 - 282	90	159 / 176	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK358991	2554	3e-58	111 - 283	90	159 / 176	CUST_28144_PI390587928 CUST_19879_PI390587928 CUST_3649_PI390587928 CUST_9768_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	3e-58	1022 - 1194	90	159 / 176	CUST_28144_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	3e-58	336 - 508	90	159 / 176	CUST_28144_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC_21811.1	509	3e-57	313 - 490	89	159 / 178	None	ABC00308 ABC00497 ABC00589 ABC00594 ABC00838 ABC00842 ABC00859 ABC00938 ABC00997 ABC01004