- Probe CUST_16539_PI390587928
- Source Contig U35_252
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16539_PI390587928 | Hv_44K_v2 | GAAGATGCATATGAGAATCATAGTACCGGCTATACATACTTTGTTTGCAGCTGGAAAAAA | 754 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 11.222 | 7.295 | 1.356 | 0.659 | 0.218 | 0.346 |
| Raw | 482.197 | 530.448 | 79.522 | 67.063 | 5.362 | 12.203 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355094 | 3254 | 2e-24 | 831 - 890 | 100 | 60 / 60 | minus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928 |
| MLOC | AK356951 | 852 | 7e-23 | 731 - 787 | 100 | 57 / 57 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928 |
| MLOC | AK249421.1 | 610 | 3e-21 | 557 - 610 | 100 | 54 / 54 | plus | ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928 |
| MLOC | MLOC_33400.1 | 169 | 3e-21 | 116 - 169 | 100 | 54 / 54 | minus | None |
| JLOC1 | JLOC1_21643.1 | 207 | 2e-21 | 154 - 207 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC00637 | 923 | 3e-25 | 750 - 809 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00343 | 667 | 3e-25 | 597 - 656 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00584 | 793 | 1e-23 | 719 - 775 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC16063 | 560 | 8e-21 | 509 - 560 | 100 | 52 / 52 | plus | |
| Harvest35 | U35_252 | 952 | 3e-25 | 755 - 814 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_485 | 1217 | 1e-23 | 1124 - 1180 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_11 | 560 | 8e-21 | 509 - 560 | 100 | 52 / 52 | plus |
Contig Sequence (952 bp)
>U35_252 952 Hv_44K_v2 TCTTCTGGAAGGCCGGTGGCAAGTCAAGTGTAGCCTGCCAAGCTAGCTATCGGCTCCCCA CCTAGCAATTTACGTACCACCATGGCCCCAGCCGTGATGGCTTCGTCAGCCACCACCGTC GCCCCCTTCCAGGGGCTCAAGTCCACCGCGGGCCTCCCCGTCAGCCGCCGCTCCGGCAGC GCCGGCCTCAGCAGCGTCAGCAATGGCGGAAGGATCAGATGCATGCAGGTGTGGCCGATT GAGGGCATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCCCTCACCACGGAGGCCCTC CTGAAGCAGGTTGACTACCTGATCCGCTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAG GTTGGCTTCGTCTTCCGTGAGCACAACAGCTCCCCCGGGTACTACGACGGCCGATACTGG ACAATGTGGAAGCTGCCTATGTTCGGGTGCACCGACGCCACACAGGTGCTCAATGAGGTC GAGGAGGTCAAAAAGGAGTACCCTGACGCCTACGTCCGTATCATCGGCTTCGACAACCTG CGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAGGCCACCGGGTTGCGAGGAGTCCGGC AAGGCATAAAGTGCAAGTTGAAGTAACCGATATACATGCCATGTTAGTTCACATTGGTCG GTCGGTAGCTCTGCTTTCTCAATTTTACTTCTTGTTCCAATCATATGTGAATATACGAGC ATATGTATGTAAGCACCTACCAACGTAGGTCGAGGAAGATGCATATGAGAATCATAGTAC CGGCTATACATACTTTGTTTGCAGCTGGAAAAAAAAAAAAAAAAATCTTGTATTGTTTTC TTCTCATGCATTTTTTGCTCAATCGTATGTTGTGTATTATCTAATGCAAAAGTTGTTATG GAATACCAAAGTACATCAAAATACTATGGAGAAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_252 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g17600.1 | 176 | 2e-107 | protein|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g26391.1 | 176 | 6e-115 | |
| Arabidopsis v10 | AT1G67090.1 | 180 | 2e-79 | | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180 |