barSeed - Barley Seed Development Database

Probe ABC27839

Source Contig ABC27839

barSeed

Links

Affymetrix Source Sequence (424 bp)

>ABC27839 424
GTCCTCCTCTCTACAGTTAATACAGTACCATGGCCCCCGCCGTGATGGCTTCGTCGGCTA
CCACCGTCGCACCCTTCCGGGGCTCAAGTCCCAGCCGGTCTCCCGGTCAGCCGCCGCTGC
TCAGCCAGTGATCGAGACTTGGGAGAGGGATGAGCGCCGTCGCCTCCCCCCCTGAACTGT
ACTCTGTATGTCTGTGTCTGTCAGCGTGTGATCTGAATCTGAAGAAGAAGAAGAAGGAAA
GCGCGTGCGAGGTCAGTGGTTTGCTGACGTTGCCGAATGCTTAGCTCTGTTCTTCCTCTC
TCGTGTTATGCTTGTACAGTCTCTTGATCCCTCCTTCAGCAAACCGTGGCCGTCTGAACT
GTTCCTGAGTACATGAATGAACACGTAATAAGAATTCTGAACTTGACAAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK358920	1181	1e-149	887 - 1181	99	295 / 298	CUST_20336_PI390587928	ABC15149 ABC27839
MLOC_22296.1	260	1e-118	22 - 260	99	239 / 242	CUST_20336_PI390587928	ABC15149 ABC27839
AK365581	1677	2e-112	1450 - 1677	99	228 / 231	CUST_20336_PI390587928	ABC15149 ABC27839
AK363391	1626	3e-70	1473 - 1624	98	152 / 155	CUST_20336_PI390587928	ABC15149 ABC27839
MLOC_345.1	163	3e-70	6 - 163	97	156 / 161	None	ABC27839
AK249454.1	954	1e-50	16 - 134	97	116 / 119	CUST_3649_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
AK358991	2554	1e-50	17 - 135	97	116 / 119	CUST_19879_PI390587928 CUST_3649_PI390587928 CUST_28144_PI390587928 CUST_9768_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
AK249868.1	737	1e-50	16 - 134	97	116 / 119	CUST_9765_PI390587928 CUST_19879_PI390587928	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK252711.1	1719	1e-50	928 - 1046	97	116 / 119	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
AK250863.1	1032	1e-50	242 - 360	97	116 / 119	CUST_19879_PI390587928 CUST_28144_PI390587928	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928