- Probe CUST_4653_PI390587928
- Source Contig U35_11
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4653_PI390587928 | Hv_44K_v2 | AGGTCGAGGAAGATGCATATGAGAATCATAGTACCGGCTATACATACTTTGTTTGCAGCT | 500 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 10.703 | 6.896 | 1.449 | 0.694 | 0.220 | 0.561 |
| Raw | 393.801 | 422.166 | 72.984 | 59.974 | 4.931 | 17.871 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356951 | 852 | 2e-24 | 723 - 782 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928 |
| MLOC | AK355094 | 3254 | 2e-24 | 839 - 898 | 100 | 60 / 60 | minus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928 |
| MLOC | AK249421.1 | 610 | 2e-24 | 549 - 608 | 100 | 60 / 60 | plus | ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC40544 ABC45928 |
| Harvest21 | ABC16063 | 560 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00637 | 923 | 3e-25 | 742 - 801 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00584 | 793 | 3e-25 | 711 - 770 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00343 | 667 | 3e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_485 | 1217 | 3e-25 | 1116 - 1175 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_252 | 952 | 3e-25 | 747 - 806 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11 | 560 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus |
Contig Sequence (560 bp)
>U35_11 560 Hv_44K_v2 GTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACACAAAGCTAGTAGGACCATGGCGCCA GCCGGAGGACGCACTACCCATCTCCTGCTCGCCCTCTTCCTATCCTTCGTCCTCGCCTCC TCCGTGGCCGCGAGCTACGAGGAGCACCGCGGCCAGGGCGCCGGGGGATTCTTCAGTGGC ATACCGTGGTTCCGCGGCGGCGGCGGCCAGCCGGGTGGCGTCCGAGGTGCCGGAGGCATA GGCGCCGGGTTCAGTGGCGGGTGGGGCGCCGGCGGAGTTGGGCCAGGGGGCGGGTTCGCG CGGCGCGGGGTGGTGCAGCCGTCGATGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAA CGGCTCACATGCCCGTCTAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAACGGCGGG GGAGGTGGTGGCTGAATTTTACTTCTTGGTCCAATCATATGTGAATATACGAGCATATGT ATGTAAGCACCTACCAACGTAGGTCGAGGAAGATGCATATGAGAATCATAGTACCGGCTA TACATACTTTGTTTGCAGCT
Homology of Contig U35_11 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |