- Probe CUST_14178_PI390587928
- Source Contig U35_39676
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14178_PI390587928 | Hv_44K_v2 | GATTCTTTGTAATGAGAATTCAAAGTATCGAGCTCCCAACACCTTCTTCCTTTTTCTTTC | 522 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.926 | 6.550 | 1.447 | 0.621 | 0.155 | 0.129 |
| Raw | 1199.084 | 1474.448 | 266.777 | 201.429 | 15.611 | 15.040 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373732 | 2269 | 2e-24 | 118 - 177 | 100 | 60 / 60 | plus | ABC00888 ABC02562 ABC02564 ABC50668 |
| MLOC | AK371539 | 1230 | 2e-24 | 1031 - 1090 | 100 | 60 / 60 | plus | ABC00446 ABC00888 ABC50668 |
| MLOC | AK248329.1 | 1657 | 2e-24 | 1477 - 1536 | 100 | 60 / 60 | plus | ABC00446 ABC00888 ABC50668 |
| MLOC | MLOC_44511.1 | 1815 | 2e-24 | 1655 - 1714 | 100 | 60 / 60 | plus | ABC00446 ABC00888 ABC50668 |
| JLOC1 | JLOC1_28849.1 | 1755 | 8e-25 | 1417 - 1476 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50668 | 354 | 3e-25 | 106 - 165 | 100 | 60 / 60 | minus | ABC50668 |
| Harvest21 | ABC35859 | 636 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26913 | 750 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00888 | 1536 | 3e-25 | 1303 - 1362 | 100 | 60 / 60 | plus | ABC00888 |
| Harvest21 | ABC00954 | 894 | 5e-23 | 566 - 621 | 100 | 56 / 56 | minus | |
| Harvest35 | U35_39676 | 636 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35493 | 421 | 3e-25 | 199 - 258 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_427 | 1575 | 3e-25 | 1320 - 1379 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_242 | 905 | 3e-25 | 733 - 792 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28146 | 656 | 5e-23 | 293 - 348 | 100 | 56 / 56 | plus |
Contig Sequence (636 bp)
>U35_39676 636 Hv_44K_v2 GAGCTCTTTTGCTTCGTCGACGCTGGTTTTTGGTCCCTGACTGCTAGTCGAGATGTCCAA GATGACGGACGAGAAGGTGATTTCGGCGCCGGCGACGGGCGGAGGGGAGGACGGGCTGAT CGCAGGGGACCTGTCAGCCGCGGAGGCGCGGGTCCGTCCGCTGGAGACGCTTTTGCGCGC CGCGCCTCTCGGGCTCTGCGTCGCCGCCATGGCCGTCATGCTCCGCGACACGCAGACCAA CGAGCTCAAGGGCATCCTCGACGTCTGCGACGAGCCCCTCGTGTCCGTCGACTTCAGGTG CTCCGACGTCTCCTCCACCATCGACGCGTCGCTCAGCATGGTCATGGGAGACGACATGGT CAAGGTCATTGCATGGTACGACAACGAGTGGGGTTACTCCCAGAGGGTCGTCGACCTCGC CGACATCGTCGCCAACCAATGGAAGTGAACGCCCCCCACAGCGGCATTGCCCTGTCAAGT GACTCCTCTCGAAATTTTCCCCAGCCGTCGTCACGGATGATCGATTCTTTGTAATGAGAA TTCAAAGTATCGAGCTCCCAACACCTTCTTCCTTTTTCTTTCTTTTCTTCTTTTCTCTTT CTCTGATTTTTCAGTGTCCAGACACGGATTATAATA
Homology of Contig U35_39676 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |