barSeed - Barley Seed Development Database

Probe CUST_7906_PI390587928

Source Contig U35_435

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7906_PI390587928	Hv_44K_v2	TTCTTCTGTGAGCTGTACTGAACTCGATATATTCAGATATGTCAGACTTTCTCTTGGGAC	1692	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.871	5.466	1.296	0.723	0.162	0.236
Raw	1854.760	2451.821	483.673	464.996	33.141	54.574

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52515.1	2184	2e-24	2121 - 2180	100	60 / 60	plus	ABC00446 ABC00888 ABC26789
JLOC1	JLOC1_33658.1	2184	8e-25	1921 - 1980	100	60 / 60	plus
Harvest21	ABC00446	1831	3e-25	1657 - 1716	100	60 / 60	plus	ABC00446
Harvest35	U35_435	1838	3e-25	1693 - 1752	100	60 / 60	plus
Harvest35	U35_34899	836	1e-23	566 - 622	100	57 / 57	minus

Contig Sequence (1838 bp)

>U35_435 1838 Hv_44K_v2
GCATGCAATCGCCTTATCCCCCGCCCATCCCAACGCCACAAACCCAAGCAGTGATCACGC
CGCCTCCTTCCCCGATCGATCGCCGGCCACATAAATAAGCCGGCGCACCACCTGCTCCTT
TCCGCCTAGCAGCAGCAGCAGCATCGTCAACAATGGCCGCCCATGCAGCTCTCGCCGCCA
CCCGCATCCCCGCCAGTGCCCGTCTGCACAGCAAGGCCGCCTCCAGGCAGAGGGTCGACT
TCGCCGACTTCTCCGGTCTGAGGCCTGGGTCGTGCTCCGTGAGCGCCGCCGCCAGGGAGG
CCTCCTTCTCCGATGTCCTCGGCGCGCAGCTCGTCGCCAGGGCTTCCGGCGAGAACGCCG
TGAGGGCGCCGGCGGAGGCGAAGCTGAAGGTGGCCATCAACGGGTTCGGCCGCATCGGGC
GCAACTTCCTCCGGTGCTGGCACGGACGCGAGAACTCCCCGCTCGAGGTCATCGTCATCA
ACGACAGCGGAGGCGTCAGGAACGCGTCTCACCTGCTCAAGTACGACTCGATGCTGGGCA
CCTTCAAGGCGGACGTGAAGATCGTGGACAACGAGACCATCAGCGTCGACGGCAAGAACA
TCCAGGTCGTCTCCAACAGGGACCCCCTCAAGCTGCCATGGGCCGAGCTCGGCATCGACA
TCGTCATCGAGGGTACCGGAGTTTTCGTTGACGGCCCCGGCGCCGGGAAGCATCTCCAGG
CCGGAGCCAAGAAGGTCATCATCACTGCTCCGGCCAAGGGTGCCGACATCCCCACCTACG
TCGTCGGTGTCAACGAGGGCGACTACGACCATGATGTTGCCAACATCATCAGCAACGCTT
CTTGCACCACCAACTGCCTCGCGCCATTCGCCAAGGTCCTGGACGAGGAGTTCGGAATCG
TGAAGGGAACCATGACCACGACGCACTCGTACACGGGCGACCAGAGGCTGCTGGACGCGT
CCCACCGCGACCTGCGGAGGGCGAGGGCGGCGGCGCTGAACATCGTGCCGACGAGCACGG
GAGCCGCCAAGGCCGTCTCCCTGGTGCTGCCACAGCTCAAGGGCAAGCTCAACGGCATCG
CGCTCCGCGTGCCCACGCCCAACGTCTCCGTGGTGGACCTCGTCATCAACACCGTCAAGA
CCGGCATCACCGCCGACGACGTGAACGCGGCGTTCCGCAAGGCCGCCGACGGGCCGCTCA
AGGGCATCCTCGACGTCTGCGACGAGCCGCTCGTGTCCGTCGACTTCCGCTGCTCAGACG
TGTCCACCAGCATCGACGCCTCCCTCACCATGGTCATGGGCGACGACATGGTCAAGGTCG
TCGCCTGGTACGACAACGAGTGGGGCTACAGCCAGCGCGTGGTTGATCTGGCGCACCTGG
TGGCGGCCAAGTGGCCGGGCGCCGGGACCGGCGGCAGCGGCGACCCCCTGGAGGACTACT
GCAAGACCGACCCCAACGCCGTGGAGTGCAAGGTGTTCGACGAGTGAACGGAGCTCGGAG
CTGGTTGCTGGCTTGACCGGTCGAGGCTGATCAGAAAACGCAACGAAGCAACTACAGTAC
ATTATTATCCTCTATCTATAGCCTATAATATGGACCTGCTGGATTGTGTTTCATTCGTTT
CGAGATTGCTCGCCGAGCTTGCGGCTTGGTGCTCTATATATCAGACAGGATTCGGGCAGA
ATAAATTGACCCTTCTTCTGTGAGCTGTACTGAACTCGATATATTCAGATATGTCAGACT
TTCTCTTGGGACTTAAAAAAAAAAAAAAAAAATTCTTGTGCCAAGTTTTGTATAACATGC
GCTTTGAGATGCTTGGATCGNAAAAAAAAAAAAAAAAA

Homology of Contig U35_435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g03720.1	445	protein\|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g76470.1	447
Arabidopsis v10	AT1G42970.1	447	\| Symbols: GAPB \| glyceraldehyde-3-phosphate dehydrogenase B subunit \| chr1:16127552-16129584 FORWARD LENGTH=447