- Probe CUST_2035_PI390587928
- Source Contig U35_32724
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2035_PI390587928 | Hv_44K_v2 | CCTTTGCAGGAAGCCTATTATAATCCGTGTCTGGACACTGAAAAATCAGAGAAAGAGAAA | 630 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 15.198 | 6.892 | 1.094 | 0.550 | 0.878 | 0.782 |
| Raw | 117.170 | 84.383 | 11.703 | 7.012 | 2.998 | 3.056 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373732 | 2269 | 2e-24 | 187 - 246 | 100 | 60 / 60 | minus | ABC00888 ABC02562 ABC02564 ABC50668 |
| MLOC | AK371539 | 1230 | 2e-24 | 1100 - 1159 | 100 | 60 / 60 | minus | ABC00446 ABC00888 ABC50668 |
| MLOC | AK248329.1 | 1657 | 2e-24 | 1546 - 1605 | 100 | 60 / 60 | minus | ABC00446 ABC00888 ABC50668 |
| MLOC | MLOC_44511.1 | 1815 | 2e-24 | 1724 - 1783 | 100 | 60 / 60 | minus | ABC00446 ABC00888 ABC50668 |
| JLOC1 | JLOC1_28849.1 | 1755 | 8e-25 | 1486 - 1545 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00888 | 1536 | 3e-25 | 1372 - 1431 | 100 | 60 / 60 | minus | ABC00888 |
| Harvest21 | ABC26913 | 750 | 1e-23 | 647 - 707 | 98 | 60 / 61 | minus | |
| Harvest35 | U35_32724 | 693 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_427 | 1575 | 3e-25 | 1389 - 1448 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_35493 | 421 | 1e-23 | 133 - 189 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_242 | 905 | 1e-23 | 802 - 862 | 98 | 60 / 61 | minus |
Contig Sequence (693 bp)
>U35_32724 693 Hv_44K_v2 TAGGGTTAGCGGGTCATCCACCCCGTCCAGACCTACGCCATGTACTACTTCTGTTTCCAC TACTTCAAGAGGATCATGGAGACCTTCTTCGTCCACCGCTTCAGCCACGCGACTTCCCCC GTGTCAAACGTCTTCAGAAACTGTGCCTACTACTGGACCTTTGGAGCCTACATTGCCTAC TACTGCAACCACCCTCTGTACACCCCCGTGAGTGACCTGCAGATGAAGATTGGGTTCGGC ATCGGGGTCGTGTGCCAGATCGCAAACTTCTACTGCCACATCCTGCTGAGGAACCTCAGG AGCCCGACCGGCAGCGGCCGCTACCCCATCCGGTTCCAGTAGCGTCGTCCGTGCATGCGT ACGTACGTCAACCTAATACAGTAATAAATAAGCTGCGTATAATGCAGGAGTGAAGGGTAA CGTGGATACTATATACGTACACGTCGATATATCGCCCTAAATAAGATGCATGGACGTATT GCAGCAGTGAAGTGTGTAACCAGATCAATGCATGTCATAACACGATTCATGCAAGAGTGC AACCATTGCAGGTGGTGCTATGCCGTCTAGCGGCCGCTGGCAAACGATAGTAGTATATAC GAGTATTACAGATGCACAGCGTTGAGACTTCCTTTGCAGGAAGCCTATTATAATCCGTGT CTGGACACTGAAAAATCAGAGAAAGAGAAAAGA
Homology of Contig U35_32724 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g05670.1 | 311 | 3e-70 | protein|3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi2g03297.1 | 311 | 8e-74 | |
| Arabidopsis v10 | AT3G55360.1 | 310 | 3e-66 | | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310 |