barSeed - Barley Seed Development Database

Probe ABC00194

Source Contig ABC00194

barSeed

Links

Affymetrix Source Sequence (1129 bp)

>ABC00194 1129
TGAANCAATGGCGACCACCGCGATGGCGCTCTCCTCCTCGTCCTTCGCCGGGAAGGCGGT
CAAGGACCTGCCGTCGTCGGCGCTTTTCGGGGAGGCGCGCGTCACCATGCGCAAGACCGC
CGCCAAGCCAACCGTGTCGGGGGGACGGGTGGTACGGCTCCGACCGCGTGCTCTACCTCG
GCCCGCTCTCCGGCGACCCCCCGAGCTACTTGACCGGTGAGTTTCCCGGTGACTACGGAT
GGGACACTGCGGGGCTCTCTGCCGACCCCGAGACCTTTGCCAAGAACCGGGAGCTGGAGG
TGATCCACTGCCGGTGGGCCATGCTCGGCGCGCTCGGCTGCGTCTTCCCCGAGCTGCTCG
CCCGCAACGGCGTCAAGTTCGGCGAGGCCGTCTGGTTCAAGGCCGGCTCCCAGATCTTCA
GCGAGGGCGGCCTCGACTACCTCGGCAACCCCAGCCTCGTCCACGCACAGAGCATCCTCG
CCATCTGGGCTTGCCAGGTCGTGCTCATGGGCGCCGTCGAGGGCTACCGTGTCGCCGGCG
GCCCGCTCGGCGAGATCGTCGACCCCCTCTACCCCGGTGGTAGCTTCGACCCCCTCGGCC
TCGCCGACGACCCCGAGGCGTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGACGCC
TTGCCATGTTCTCCATGTTCGGCTTTTTCGTGCAGGCCATTGTCACTGGCAAGGGCCCAT
TGGAGAACCTCGCCGACCACCTTGCCGACCCCGTCAACAACAACGCGTGGGCCTTCGCCA
CCAACTTTGTGCCCGGCAAGTAAGCTACGTGTGTTGTCACCACTAGTGTCTAGAAACCGA
CAGTGCACGTACGTACGCGATGAAGTGTGCAGCTGGTTTCGTTTGTACAACCATGATGTA
AAGTACGAGGGTTGAATGCAAAAGACTATTGTTAGACTTAAAAAAAAAAAAAAAAAAAAA
CTCTTATGATGCACCAGAGCATGCATGCAATCACCTGTGTTATTTAACAGCTAGTTGATC
TTGCAATCGATCGGCTTTCAGTTTCTTAGGTGAAAAAAATATCAACTGACACAAGATCTT
TGCTTGCTGTGCGGTCTAGTTTTTTTCTTAGTTGAGCAGATACTTGAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250765.1	1054	0.0	75 - 1018	99	932 / 944	None	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00433 ABC00606 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
MLOC_44927.1	838	0.0	87 - 838	98	738 / 752	CUST_13341_PI390587928	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
AK372776	1096	0.0	98 - 883	90	710 / 789	CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_69498.1	1386	0.0	371 - 1086	89	639 / 718	CUST_35738_PI390587928	ABC00006 ABC00189 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC25177 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC53022
MLOC_81109.1	1237	0.0	283 - 1086	86	691 / 804	CUST_35720_PI390587928	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00828 ABC00837 ABC00926 ABC00944 ABC00981 ABC01012 ABC26767 ABC53022
MLOC_44067.1	1132	0.0	132 - 935	86	690 / 804	CUST_13391_PI390587928	ABC00006 ABC00194 ABC00422 ABC00425 ABC00433 ABC00828 ABC00926 ABC00949 ABC00981 ABC01012 ABC26767 ABC53022
MLOC_945.1	1383	0.0	266 - 1068	85	687 / 804	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
AK250272.1	1007	0.0	63 - 865	85	684 / 804	CUST_13352_PI390587928 CUST_5030_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
MLOC_72290.1	1432	0.0	293 - 1096	85	682 / 804	CUST_10630_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC48253 ABC53022
AK370975	1122	0.0	55 - 858	85	681 / 805	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
AK253131.1	1012	0.0	84 - 882	85	676 / 800	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
AK248556.1	1012	0.0	106 - 885	85	660 / 780	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_56052.1	1307	0.0	376 - 1179	84	677 / 805	CUST_35771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00949 ABC00951 ABC00981 ABC26749 ABC31752 ABC53022
MLOC_73205.1	1276	0.0	320 - 1123	84	676 / 805	CUST_13384_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC46820 ABC48253
AK252089.1	1119	0.0	212 - 1015	84	675 / 805	CUST_13384_PI390587928	ABC00006 ABC00189 ABC00194 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC09102 ABC46820 ABC48253
MLOC_78528.2	1256	0.0	222 - 1004	84	658 / 784	CUST_7895_PI390587928	ABC00006 ABC00194 ABC00418 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC_71603.1	698	0.0	267 - 698	97	420 / 432	None	ABC00006 ABC00194 ABC00425 ABC00433 ABC00606 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926
AK248909.1	977	0.0	89 - 864	84	649 / 776	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_67012.1	762	1e-177	344 - 762	94	392 / 419	CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_22471.1	923	8e-175	261 - 887	84	531 / 629	CUST_16534_PI390587928 CUST_35749_PI390587928	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
MLOC_22471.2	1220	8e-175	158 - 784	84	531 / 629	CUST_16534_PI390587928	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
AK356138	877	4e-173	145 - 771	84	530 / 629	None	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
AK248335.1	1078	4e-173	241 - 867	84	530 / 629	CUST_35749_PI390587928	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
MLOC_29257.1	953	6e-171	313 - 953	84	537 / 641	None	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_41838.1	787	1e-163	261 - 786	87	455 / 526	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_7198.1	839	5e-142	239 - 839	82	493 / 601	None	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC25177
MLOC_945.2	911	2e-125	390 - 870	84	404 / 482	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
MLOC_78528.1	881	1e-113	222 - 597	86	325 / 376	CUST_7895_PI390587928	ABC00006 ABC00194 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC_35646.1	260	4e-103	1 - 255	93	238 / 255	None	ABC00194 ABC00418 ABC00628 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_67011.1	1952	3e-85	1721 - 1952	91	212 / 232	CUST_37480_PI390587928 CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_54581.1	1145	6e-67	1 - 217	88	191 / 217	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00432 ABC00433 ABC00628 ABC00837 ABC00841 ABC00951 ABC00960 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_48202.1	675	4e-63	334 - 675	80	273 / 342	None	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949