barSeed - Barley Seed Development Database

Probe CUST_13341_PI390587928

Source Contig U35_399

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13341_PI390587928	Hv_44K_v2	GTGTTATTTAACAGCTAGTTGATCTTGCAATCGATCGGCTTTAAGTTTCTTAGGTGAAAA	1093	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.876	6.751	1.443	0.673	0.291	0.288
Raw	168.042	282.270	46.417	39.299	4.072	4.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44927.1	838	7e-23	160 - 219	98	59 / 60	minus	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
JLOC1	JLOC1_29153.1	861	4e-23	183 - 242	98	59 / 60	minus
Harvest21	ABC00853	1227	3e-25	1083 - 1142	100	60 / 60	plus
Harvest21	ABC00194	1129	1e-23	74 - 133	98	59 / 60	minus	ABC00194
Harvest35	U35_399	1238	3e-25	1094 - 1153	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_399 1238 Hv_44K_v2
TCGAGCACTGTTGGCCTAAGGAATCCCGCCATACACCACCACAGCCCCACTGTTAGCGAG
CACGCACACCGGACACGCACGAGTCTCCTTGAAGCAATGGCGACCACCGCGATGGCGCTC
TCCTCCTCGTCCTTCGCCGGGAAGGCGGTCAAGGACCTGCCGTCGTCGGCGCTTTTCGGG
GAGGCGCGCGTCACCATGCGCAAGACCGCCGCCAAGGCCAAGCCGGTGTCGTCCAGCAGC
CCGTGGTACGGCTCCGACCGCGTGCTCTACCTCGGCCCGCTCTCCGGCGACCCCCCGAGC
TACTTGACCGGTGAGTTTCCCGGTGACTACGGATGGGACACTGCGGGGCTCTCTGCCGAC
CCCGAGACCTTTGCCAAGAACCGGGAGCTGGAGGTGATCCACTGCCGGTGGGCCATGCTC
GGCGCGCTCGGCTGCGTCTTCCCCGAGCTGCTCGCCCGCAACGGCGTCAAGTTCGGCGAG
GCCGTCTGGTTCAAGGCCGGCTCCCAGATCTTCAGCGAGGGCGGCCTCGACTACCTCGGC
AACCCCAGCCTCGTCCACGCACAGAGCATCCTCGCCATCTGGGCTTGCCAGGTCGTGCTC
ATGGGCGCCGTCGAGGGCTACCGTGTTGCCGGCGGCCCGCTCGGCGAGATCGTCGACCCC
CTCTACCCCGGTGGTAGCTTCGACCCCCTCGGCCTCGCCGACGACCCCGAGGCGTTCGCC
GAGCTCAAGGTGAAGGAGATCAAGAACGGACGCCTTGCCATGTTCTCCATGTTCGGCTTT
TTCGTGCAGGCCATTGTCACTGGCAAGGGCCCATTGGAGAACCTCGCCGACCACCTTGCC
GACCCCGTCAACAACAACGCGTGGGCCTTCGCCACCAACTTTGTGCCCGGCAAGTAAGCT
ACGTGTGTTGTCACCACGAGTGTCTAGAAACCGACAGTGCCTACGTACGTACGCGATGAA
GTGTGCAGCTGGTTTCGTTTGTACAACCATGATGTAAAGTACGAGGGTTGAATGCAAAAG
ACTATTGTTAGAAAAAAAAAAAAAAAAAGATGATCATCTCTTATGATGCACCAGAGCATG
CATGCAATCACCTGTGTTATTTAACAGCTAGTTGATCTTGCAATCGATCGGCTTTAAGTT
TCTTAGGTGAAAAAAATATCAACTGACACAAGATCTTTGCTTGCTGTGCGGTCTAGTTTT
TTTCTTAGTTGAGCAGATACTTGAAAAAAAAAAAAAAA

Homology of Contig U35_399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	2e-167	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g12130.1	267	1e-178
Arabidopsis v10	AT2G34420.1	265	4e-156	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265