barSeed - Barley Seed Development Database

Probe ABC00006

Source Contig ABC00006

barSeed

Links

Affymetrix Source Sequence (1660 bp)

>ABC00006 1660
CCATTCATGTGAAATCAAAGGACTCTGCAAAAGCATTGTTACATTTGTCCAATGCAGTAG
TGCCTCCATATATACTGCCACTTAATGTTTCTGAAACCTAGCTTAAAGCAGTCATATAGT
TACTTTGTGTTCCAAAGGAAAAGTCATATTGTTAGTTAGCAGCCATAAGATGAATGCAAG
TAGGTCTAGTATATGAATCCAAATTAAGCCCGGTCGAAAGTATGTTAAAAAAAATGGATA
TATCTAGCTTTATTTATGGAATTTGGTTCAATAATGTGACCTTTCACCACGAGGAGATGG
TACATCCTATGTCATATCTTCATTTACTGAAATCTAAAAGATACATGAGCGCGACAGCTC
GCCGAAGTGGGCGCGATGCTTTCCGGTACATGTGAACCATGCAGGTCTCACTCACACACA
TGATCCAATTAATCGGCTGTCTCCAAGGAAATCAAGTCACAGCCAATCCTAGCCACAAGC
TCACAGCAATACTCATTTCTCTTGGCTCTCACTACGCCAAGTGTTCTGTGAGCAAGAGAT
CTATGCAGCACCAATGGCAGCAAAGCTCAAGATTTTTCTCTCTATCCATGTTCATCTTGT
CAGATTACACACCAAATGGATTCCCTATGGCACCTCCTGCTGCCTTAAGTAGTCACCTCC
CCCTCTTCTCTCAAATCATCTCCACACTCACTCAGCTCCTTGAGAACCCATATAGCAGAC
ACTTCGCTTAGCTTTCCAATGGCGGCAGCCACCATGTCCATCTCCTCGACCTTTGCCGGC
AAGACGGTGAAGAACGTACCATCTTTGGTTCTCTTTGGCGAAGCCCGAGTCACCATGCGC
AAGACCGGAGCAAAGGCAAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGTGCCGACCGT
GTGCTCTACCTCGGCCCACTCTCCGGTGAGCCCCCGAGCTACCTCACCGGTGAGTTCCCA
GGCGACTATGGGTGGGACACTGCCGGACTTTCAGCTGACCCTGAGACCTTCGCCAAGAAC
CGGGAGCTGGAGGTGATCCATTGTCGATGGGCCATGCTCGGAGCACTTGGTTGTGTCTTT
CCTGAGTTGCTCGCTCGCAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCCGGT
TCCCAGATCTTTAGTGAGGGTGGTCTCGACTACCTTGGCAACCCAAGCCTCGTCCACGCA
CAAAGTATCCTAGCTATTTGGGCATGCCAGGTGGTGCTCATGGGTGCCGTCGAGGGGTAC
CGCATTGCAGGCGGCCCACTCGGTGAGATCGTCGACCCACTCTACCCAGGTGGCAGCTTC
GACCCTCTTGGCCTGGCTGAAGACCCTGAGGCATTCGCCGAGCTCAAGGTGAAGGAGATC
AAGAATGGTCGCCTCGCCATGTTCTCAATGTTTGGCTACTTTGTCCAAGCTATCGTCACT
GGAAAGGGCCCACTCGAGAACCTCGCTGACCACATCGCCGACCCCGTCAACAACAATGCA
TGGGCATTCGCCACCAACTTTGTCCCCGGCAAGTAAGGTGTCTTATGACTATGCTCACCA
TGAGGCATGTTGTCCTGTGGTCTGAGTTGTACTACCATGATGTAAATTACGAGACTTTTG
GCAAAAGAACAGTTCGATTTGTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_72290.1	1432	0.0	1 - 1203	94	1136 / 1203	CUST_10630_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC48253 ABC53022
AK248909.1	977	0.0	2 - 973	99	968 / 972	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
AK248556.1	1012	0.0	7 - 1009	95	954 / 1005	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_29257.1	953	0.0	1 - 953	94	902 / 955	None	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_7198.1	839	0.0	1 - 839	94	786 / 839	None	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC25177
MLOC_48202.1	675	0.0	1 - 675	99	674 / 675	None	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949
MLOC_58758.4	1225	0.0	145 - 1225	87	946 / 1088	CUST_38589_PI390587928	ABC00006 ABC00347 ABC00432 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00949 ABC01012 ABC25177 ABC32758 ABC53022
MLOC_41838.1	787	0.0	152 - 786	99	631 / 635	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
AK356022	968	0.0	21 - 967	88	839 / 949	None	ABC00006 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC25177 ABC53022
MLOC_58758.2	1185	0.0	18 - 981	88	852 / 968	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
MLOC_58758.3	982	0.0	17 - 980	88	852 / 968	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
AK252077.1	1014	0.0	12 - 976	87	844 / 967	CUST_2914_PI390587928	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
AK248894.1	957	0.0	5 - 933	87	812 / 929	CUST_35629_PI390587928	ABC00006 ABC00347 ABC00433 ABC00628 ABC00837 ABC00841 ABC00949 ABC00960 ABC25177 ABC26749 ABC26767 ABC32758 ABC53022
AK253131.1	1012	0.0	4 - 1009	84	851 / 1016	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
MLOC_73205.1	1276	0.0	320 - 1191	86	754 / 880	CUST_13384_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC46820 ABC48253
AK370975	1122	0.0	27 - 961	84	795 / 943	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
AK252089.1	1119	0.0	212 - 1083	85	752 / 880	CUST_13384_PI390587928	ABC00006 ABC00189 ABC00194 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC09102 ABC46820 ABC48253
AK250272.1	1007	0.0	63 - 948	85	752 / 887	CUST_13352_PI390587928 CUST_5030_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
MLOC_78528.2	1256	0.0	132 - 1026	84	756 / 895	CUST_7895_PI390587928	ABC00006 ABC00194 ABC00418 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC_945.1	1383	0.0	262 - 1068	86	697 / 807	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
MLOC_56052.1	1307	0.0	376 - 1180	86	695 / 806	CUST_35771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00949 ABC00951 ABC00981 ABC26749 ABC31752 ABC53022
MLOC_56051.1	1187	0.0	330 - 1134	85	688 / 805	CUST_7905_PI390587928	ABC00006 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949 ABC00951 ABC26767
MLOC_4849.1	1378	0.0	161 - 962	85	683 / 802	CUST_4869_PI390587928 CUST_35760_PI390587928	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00944 ABC00981 ABC01012 ABC26767 ABC26824 ABC26853 ABC53022
MLOC_81109.1	1237	0.0	283 - 1086	85	683 / 804	CUST_35720_PI390587928	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00828 ABC00837 ABC00926 ABC00944 ABC00981 ABC01012 ABC26767 ABC53022
MLOC_44067.1	1132	0.0	132 - 935	85	682 / 804	CUST_13391_PI390587928	ABC00006 ABC00194 ABC00422 ABC00425 ABC00433 ABC00828 ABC00926 ABC00949 ABC00981 ABC01012 ABC26767 ABC53022
AK250765.1	1054	0.0	108 - 883	85	658 / 776	None	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00433 ABC00606 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
MLOC_69498.1	1386	0.0	371 - 1071	87	612 / 707	CUST_35738_PI390587928	ABC00006 ABC00189 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC25177 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC53022
AK372776	1096	0.0	157 - 878	86	621 / 724	CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_58758.1	943	4e-90	122 - 421	87	261 / 300	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC32758
MLOC_54581.1	1145	1e-140	1 - 324	95	307 / 324	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00432 ABC00433 ABC00628 ABC00837 ABC00841 ABC00951 ABC00960 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_67012.1	762	2e-133	349 - 757	88	359 / 409	CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_44927.1	838	8e-132	412 - 838	87	370 / 427	CUST_13341_PI390587928	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
MLOC_945.2	911	6e-73	187 - 396	90	190 / 210	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
MLOC_78528.1	881	5e-129	132 - 596	85	394 / 465	CUST_7895_PI390587928	ABC00006 ABC00194 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC_32563.1	302	6e-103	19 - 302	91	259 / 284	CUST_7897_PI390587928	ABC00006 ABC00347 ABC00432 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC26749 ABC32758 ABC53022
MLOC_71603.1	698	1e-99	300 - 698	83	332 / 399	None	ABC00006 ABC00194 ABC00425 ABC00433 ABC00606 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926
MLOC_42878.1	376	2e-77	29 - 373	82	291 / 353	None	ABC00006 ABC00432 ABC00617 ABC00837 ABC53022
MLOC_67011.1	1952	8e-72	1726 - 1948	89	198 / 223	CUST_37480_PI390587928 CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_4849.2	933	1e-59	108 - 323	86	186 / 216	None	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00981 ABC26767 ABC26824 ABC26853 ABC53022