barSeed - Barley Seed Development Database

Probe CUST_35720_PI390587928

Source Contig U35_431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35720_PI390587928	Hv_44K_v2	ATTGTAACACCAACATGTAAATTATGAGAATTGTGTGCGAAGACATTGTTTGGTTTGTCC	927	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.313	3.957	1.310	0.570	0.232	0.264
Raw	136.558	208.543	54.835	41.111	3.962	6.228

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81109.1	1237	2e-24	182 - 241	100	60 / 60	minus	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00828 ABC00837 ABC00926 ABC00944 ABC00981 ABC01012 ABC26767 ABC53022
JLOC1	JLOC1_53969.1	1141	8e-25	98 - 157	100	60 / 60	minus
Harvest21	ABC00910	1189	3e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC00828	978	1e-24	25 - 83	100	59 / 59	minus	ABC00828
Harvest35	U35_431	1007	3e-25	928 - 987	100	60 / 60	plus

Contig Sequence (1007 bp)

>U35_431 1007 Hv_44K_v2
TCGAGCACTGTTGGCCTACTATCTCCACACACTCAAGCCTCATTCTTGGAGAACACACAG
CACACTATTAGTCTCTGCAGCGCAATGGCGGCCACCACCATGTCTCTTTCCTCTTCGTCC
TTCGCCGGCAAGGCCCTGAAGAACTTGCCCTCGCCGGCTCTCATTGGCGAGGCACGTGTG
ACCATGCGCAAGACAGCCGCGAAGGCCAAGCAGGTTTCGTCGGGCAGCCCATGGTACGGC
TCTGACCGTGTGCTCTACCTCGGCCCCCTTTCCGGCGAGCCACCAAGCTACTTGACTGGT
GAGTTCCCCGGTGACTACGGATGGGACACCGCCGGGCTCTCGGCTGACCCTGAGACCTTC
GCCAAGAACCGGGAGCTCGAGGTGATTCACTGCCGATGGGCCATGCTCGGTGCTCTTGGT
TGTGTCTTTCCCGAGTTGCTTGCCCGCAATGGCGTGAAGTTCGGCGAGGCCGTCTGGTTC
AAGGCTGGCTCTCAGATCTTCAGCGAGGGTGGCCTCGACTACCTTGGCAACCCCAGTCTC
GTTCATGCTCAAAGCATCCTCGCCATCTGGGCTTGTCAGGTTGTGCTCATGGGTGCCGTT
GAGGGGTACCGCATTGCTGGTGGTCCGCTCGGCGAGATCGTTGACCCACTCTACCCTGGT
GGCAGCTTTGACCCGCTTGGTCTGGCCGACGACCCCGAGGCATTTGCGGAGCTCAAGGTT
AAGGAGATTAAGAATGGTCGGCTTGCCATGTTCTCCATGTTTGGCTTCTTCGTGCAGGCA
ATTGTCACTGGCAAGGGCCCATTGGAGAACCTTGCAGACCACATTGCCGACCCTGTCAAC
AACAATGCGTGGGCATTCGCCACCAACTTCGTGCCTGGAAAGTAAGACAGGAGTGATGAA
TGCGAGTTGTATGTGAGTGTGAGATGAATTGTAACACCAACATGTAAATTATGAGAATTG
TGTGCGAAGACATTGTTTGGTTTGTCCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	6e-170	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g12130.1	267	0.0
Arabidopsis v10	AT2G34420.1	265	1e-160	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265