barSeed - Barley Seed Development Database

Probe ABC00418

Source Contig ABC00418

barSeed

Links

Affymetrix Source Sequence (958 bp)

>ABC00418 958
CAGCTCTCTCTGAGATAACTCCGGTCTTAGCAGAGCAATGGCGGCCACCACTATGTCCCT
CTCCTCCTCAGCCTTTGCCGGCAAGGCAGTGAAGAATATGGCATTGTCTGCTCTCTTTGG
CGAGGCACGTGTCACTATGCGGAAGACTGCGGCAAAGGCAAAACAAGTTGCTTCTAGCAG
CCCATGGTACGGTGCTGATCGTGTGCTCTACCTCGGTCCGCTATCAGGTGAGCCACCGAG
CTACTTGACCGGCGAGTTCCCTGGTGACTATGGGTGGGATACTGCCGGGCTCTCAGCTGA
CCCTGAGACCTTCGCCAAGAACCGTGAGCTGGAGGTGATCCACTGTCGATGGGCTATGCT
TGGTGCGCTTGGTTGTGTCTTCCCCGAGTTGCTCGCCCGCAATGGCGTCAAGTTTGGTGA
GGCTGTTTGGTTCAAGGCCGGCTCCCAAATCTTCAGCGAAGGCGGCCTTGACTATCTCGG
CAACCCCAGCCTCGTCCACGCGCAAAGCATCCTAGCCATTTGGGCTTGCCAAGTTGTGCT
CATGGGCGCCGTCGAGGGGTACCGCATTGCTGGTGGCCCACTTGGCGAGATTGTTGACCC
ACTTTACCCTGGAGGCAGCTTTGACCCACTTGGCTTAGCCGAGGACCCCGAGGCATTCGC
TGAGCTTAAGGTGAAGGAGATCAAGAACGGTCGTCTTGCTATGTTCTCCATGTTCGGCTT
TTTCGTTCAAGCCATTGTCACCGGCAAGGGCCCACTCGAGAATCTTGCTGACCATATTGC
CGATCCAGTCAACAACAATGCATGGGCATTCGCCACTAACTTCGTGCCCGGCAAGTAAGG
CACCCACTATGGTTGCACTTGCAAGCTGCGGGATGGTCTGATTTGTACTACCAATGATGT
AAATTACAAGGATCCGTGCAAATGCATTGTTTGATTCATCGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56051.1	1187	0.0	228 - 1166	100	939 / 939	CUST_7905_PI390587928	ABC00006 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949 ABC00951 ABC26767
MLOC_56052.1	1307	0.0	280 - 1198	89	819 / 921	CUST_35771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00949 ABC00951 ABC00981 ABC26749 ABC31752 ABC53022
MLOC_72290.1	1432	0.0	293 - 1097	87	701 / 805	CUST_10630_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC48253 ABC53022
AK248556.1	1012	0.0	82 - 1009	84	783 / 933	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
AK356022	968	0.0	58 - 862	86	693 / 805	None	ABC00006 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC25177 ABC53022
MLOC_78528.2	1256	0.0	224 - 1026	86	692 / 804	CUST_7895_PI390587928	ABC00006 ABC00194 ABC00418 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC48253
MLOC_81109.1	1237	0.0	283 - 1092	86	695 / 810	CUST_35720_PI390587928	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00828 ABC00837 ABC00926 ABC00944 ABC00981 ABC01012 ABC26767 ABC53022
MLOC_73205.1	1276	0.0	320 - 1124	86	691 / 807	CUST_13384_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC46820 ABC48253
AK248909.1	977	0.0	64 - 865	85	688 / 805	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_945.1	1383	0.0	265 - 1068	85	688 / 807	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
AK358669	1024	0.0	44 - 859	85	692 / 816	CUST_13360_PI390587928 CUST_7894_PI390587928	ABC00189 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00841 ABC00926 ABC26749 ABC32758 ABC53022
AK250272.1	1007	0.0	63 - 866	85	686 / 807	CUST_13352_PI390587928 CUST_5030_PI390587928	ABC00006 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013
AK372776	1096	0.0	157 - 878	84	609 / 722	CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_29257.1	953	0.0	289 - 946	86	565 / 658	None	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_69498.1	1386	0.0	371 - 1033	85	565 / 663	CUST_35738_PI390587928	ABC00006 ABC00189 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC25177 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC53022
MLOC_7198.1	839	0.0	239 - 837	87	522 / 599	None	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC25177
MLOC_41838.1	787	1e-162	260 - 786	86	455 / 527	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_9033.1	1159	2e-141	713 - 1156	87	387 / 444	CUST_13360_PI390587928 CUST_7894_PI390587928	ABC00189 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC26749 ABC26767 ABC32758 ABC53022
MLOC_44068.1	650	2e-121	192 - 650	84	385 / 459	None	ABC00189 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00841 ABC00926 ABC53022
MLOC_48202.1	675	3e-99	309 - 672	85	311 / 367	None	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949
MLOC_35646.1	260	8e-70	1 - 255	85	218 / 255	None	ABC00194 ABC00418 ABC00628 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_945.2	911	1e-62	190 - 395	88	182 / 207	None	ABC00006 ABC00189 ABC00194 ABC00418 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC32758 ABC48253 ABC53013