barSeed - Barley Seed Development Database

Probe CUST_13384_PI390587928

Source Contig U35_389

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13384_PI390587928	Hv_44K_v2	GTGTGGTCTGAGTTGTACTACCACGATGTAAATTATGAATATTCTATGCAAAATCATGGT	934	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.122	5.002	1.348	0.656	0.208	0.306
Raw	1039.064	1402.095	306.414	258.455	25.460	42.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252089.1	1119	2e-24	1049 - 1108	100	60 / 60	plus	ABC00006 ABC00189 ABC00194 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC09102 ABC46820 ABC48253
MLOC	MLOC_73205.1	1276	2e-24	1157 - 1216	100	60 / 60	plus	ABC00006 ABC00194 ABC00418 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC46820 ABC48253
JLOC1	JLOC1_48728.1	1325	8e-25	1018 - 1077	100	60 / 60	plus
Harvest21	ABC48253	414	3e-25	29 - 88	100	60 / 60	minus	ABC48253
Harvest21	ABC00836	987	3e-25	893 - 952	100	60 / 60	plus
Harvest21	ABC00926	1014	5e-23	923 - 978	100	56 / 56	plus	ABC00926
Harvest35	U35_389	1025	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_389 1025 Hv_44K_v2
TCATCGTGATGGGGATAGATCATTGCAATTGTATCTCCACACCTACTCCTCATTCTTGGA
GAACAAAATACAGCATACACAAGACCTCCATCGACAACAATGGCGGCAACGACCATGTCC
CTCTCTTCCCCAGCCTTTGCCGGCAAGGTAGTGAAGGACTTGCCATCGTCGTCTCTTTTC
GGGGAGGCTCGCGTCACCATGCGCAAGACGGCGGCAAAGGCCAAGAAGGTTGCCTCCAGC
AGCCCGTGGTACGGCTCTGACCGGGTCCTCTACCTCGGCCCACTTTCTGGTGAGCCCCCG
AGCTACCTGACCGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCTGGACTGTCGGCT
GACCCAGAGACCTTCGCCAAGAACCGGGAGCTCGAGGTGATCCATTGCCGTTGGGCCATG
CTTGGCGCGCTCGGTTGTGTCTTCCCCGAGCTGCTCGCCCGCAACGGTGTTAAGTTCGGT
GAGGCTGTTTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGTGGCCTTGACTACCTC
GGCAACCCAAGCCTTGTGCACGCCCAGAGTATCCTTGCCATTTGGGCTTGTCAGGTTGTG
CTCATGGGTGCCGTTGAGGGTTACCGCATTGCTGGTGGACCACTTGGTGAGATCGTCGAC
CCATTATACCCGGGTGGCAGCTTCGACCCGCTCGGCCTTGCTGACGACCCGGAGGCATTC
GCCGAGCTCAAGGTTAAGGAGGTCAAGAACGGTCGCCTCGCCATGTTCTCCATGTTTGGA
TTCTTTGTTCAAGCCATCGTCACCGGCAAAGGTCCACTCGAGAACCTTGCTGACCACCTC
GCCGACCCTGTCAACAACAATGCTTGGGCATTCGCCACCAACTTCGTTCCCGGCAAGTAA
GGTGTCTTGAAGACCCATGGTGAAGTGTGTCGTTGTGTGGTCTGAGTTGTACTACCACGA
TGTAAATTATGAATATTCTATGCAAAATCATGGTTATATTTGCCCAAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-160	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g12130.1	267	6e-169
Arabidopsis v10	AT2G34420.1	265	3e-151	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265