barSeed - Barley Seed Development Database

Probe CUST_13360_PI390587928

Source Contig U35_392

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13360_PI390587928	Hv_44K_v2	CTGCTCACAGTGAAGTGTGAGGTTGTGTGGTTTGATTTGTACTACCATGATGTAAATTAT	868	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.581	3.530	1.509	0.617	0.335	0.330
Raw	97.018	116.423	42.139	28.142	3.556	4.628

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358669	1024	2e-24	870 - 929	100	60 / 60	plus	ABC00189 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00841 ABC00926 ABC26749 ABC32758 ABC53022
MLOC	MLOC_9033.1	1159	2e-24	643 - 702	100	60 / 60	minus	ABC00189 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC26749 ABC26767 ABC32758 ABC53022
JLOC1	JLOC1_5941.1	921	8e-25	312 - 371	100	60 / 60	minus
Harvest21	ABC00432	952	3e-25	859 - 918	100	60 / 60	plus	ABC00432
Harvest21	ABC00617	952	1e-23	846 - 905	98	59 / 60	plus	ABC00617
Harvest35	U35_392	1020	3e-25	869 - 928	100	60 / 60	plus
Harvest35	U35_447	1086	4e-24	959 - 1016	100	58 / 58	plus

Contig Sequence (1020 bp)

>U35_392 1020 Hv_44K_v2
ACACTCACACCTCATTTGAAGAACAAACACATAAAACAGACATCTTAGCACTCCAATGGC
GGCCACCACCATGTCCCTCTCCTCATCGACATTCGCAGGCAAAGCGGTGAAGAATGTCCC
ATCGTCAGCTCTCTTCGGCGAGGCCCGCGTCACCATGCGCAAGACCACGGCAAAAGCTAA
GCAGGTTTCCTCCGGCAGCCCATGGTACGGAGCTGATCGCGTGCTCTACCTCGGCCCACT
CTCTGGCGAGCCCCCAAGCTACCTCACCGGTGAGTTCCCCGGTGACTACGGGTGGGACAC
GGCTGGACTCTCTGCTGACCCCGAGACCTTCTCGAAGAACCGTGAGTTGGAGGTTATCCA
CTGCCGCTGGGCTATGCTTGGCGCACTGGGTTGCGTGTTCCCTGAGTTGCTGGCCCGCAA
TGGTGTGAAGTTCGGCGAGGCTGTCTGGTTCAAGGCCGGCTCCCAAATCTTCAACGAAGG
TGGCCTCGACTACCTCGGCAACCCAAGCCTCGTCCATGCTCAGAGCATCCTTGCCATTTG
GGCTTGCCAGGTTGTGCTTATGGGCGCTGTTGAGGGGTACCGTGTTGCCGGCGGCCCACT
CGGCGAGATCGTTGACCCTCTCTACCCGGGCGGAAGCTTTGACCCACTCGGTCTGGCTGA
TGACCCCGAGGCATTCGCCGAGCTTAAGGTGAAGGAGATCAAGAACGGCCGCCTTGCCAT
GTTCTCAATGTTTGGCTTCTTTGTCCAGGCCATAGTCACCGGCAAGGGCCCACTCGAGAA
CCTTGGTGACCACATCACCGACCCTGTCAACAACAACGCCTGGGCATTTGCCACCAACTT
CGTCCCCGGCAAATAAGGTGTTCTGGAGCTGCTCACAGTGAAGTGTGAGGTTGTGTGGTT
TGATTTGTACTACCATGATGTAAATTATGAGAATTGAATTCTCTGGAGAAGCATTGTTAG
ATTTGGCATCTAGCATTTGTTGGGATTATCAGAAAAAAAAAAAAAAAAAAGCATCTAGCA

Homology of Contig U35_392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	2e-169	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	6e-159	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265