barSeed - Barley Seed Development Database

Probe ABC00422

Source Contig ABC00422

barSeed

Links

Affymetrix Source Sequence (1226 bp)

>ABC00422 1226
CAGTAAGCCTCTCCCTCACCCCATCAGAGAACCTAAGGGACAACTCCCGTCTTAGCAGCC
CAATGGCGGCGGCCACCATGTCCCTTTCCTCCCCGGCCTTTGCCGGCAAGGCGGTGAAGA
ATGTGTCGTTGTCGGCCCTCTTCGGCGAGGCACGCGTCACCATGCGCAAGACTACGGCAA
AGGCAAAGCAAGTTGCTTCGAGCAGCCCGTGGTACGGTGCCGATCGCGTGCTCTACCTCG
GCCCACTATCAGGTGAGCCGCCGAGCTATTTGACCGGTGAGTTCCCCGGTGACTATGGGT
GGGACACCGCTGGACTCTCAGCTGACCCTGAGACCTTCGCAAAGAACCGCGAGCTGGAGG
TGATCCATTGTCGATGGGCCATGCTTGGTGCCCTCGGATGTGTCTTCCCTGAGTTGCTCG
CCCGCAATGGCGTTAAGTTTGGCGAGGCTGTTTGGTTCAAGGCCGGCTCCCAAATCTTCA
GCGAGGGCGGCCTCGACTATCTCGGCAACCCTAGTCTCGTCCACGCGCAAAGCATTCTGG
CCATTTGGGCTTGCCAAGTTGTGCTCATGGGCGCCGTCGAGGGGTACCGCATTGCCGGTG
GCCCACTCGGCGAGATCGTTGACCCACTTTATCCTGGAGGCAGCTTTGACCCACTCGGCC
TAGCCGACGACCCTGAGGCGTTCGCGGAGCTCAAGGTGAAGGAGATCAAGAACGGCCGCC
TTGCCATGTTCTCCATGTTTGGCTTCTTTGTGCAGGCCATCGTCACCGGCAAAGGCCCGC
TAGAGAACCTCGCTGACCATATCACTGATCCCGTCAACAACAATGCATGGGCATTTGCCA
CCAACTTCGTGCCCGGCAAGTAAGACACCTTCTAGGGCTGAGTTGAGAGCTGGCAGGATG
GTCTGCTATGTACTACCATCATGTAAATTACAAGAATCAGTGCAAAATCATTGTTTGATT
TGCCAACATTCACTCTCATGTCCTGTATTTTAGCTACTTGTTGTGGTTGCACTCTACCAC
ACTAGACAATGATTTGTGCACTGCTAATGTCGGCTGTCAGGAAATATGTGGTGCTCAAAT
TTGGTATATGTGGTTGGGATCTCAATTAGGCTAGCGCTCTAAATACTTGCCAAATGTCAA
CCAATAGGAATAACCTCATTGTGGGTCGTTGAAATTTGGTCAACCACTTCGTGTTGCATG
TTATAATAAATTTGCAATAATAAACG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56052.1	1307	0.0	14 - 1236	99	1221 / 1223	CUST_35771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC00949 ABC00951 ABC00981 ABC26749 ABC31752 ABC53022
MLOC_56051.1	1187	0.0	234 - 1153	89	820 / 921	CUST_7905_PI390587928	ABC00006 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949 ABC00951 ABC26767
AK370975	1122	0.0	45 - 981	85	797 / 940	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
AK253131.1	1012	0.0	74 - 995	85	784 / 924	CUST_38623_PI390587928 CUST_2883_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022
AK358669	1024	0.0	44 - 858	87	705 / 815	CUST_13360_PI390587928 CUST_7894_PI390587928	ABC00189 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00841 ABC00926 ABC26749 ABC32758 ABC53022
AK356022	968	0.0	58 - 861	87	696 / 804	None	ABC00006 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012 ABC25177 ABC53022
AK248556.1	1012	0.0	81 - 995	84	773 / 917	CUST_35730_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_72290.1	1432	0.0	282 - 1096	86	703 / 815	CUST_10630_PI390587928	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC48253 ABC53022
AK252077.1	1014	0.0	46 - 868	86	707 / 823	CUST_2914_PI390587928	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
MLOC_58758.2	1185	0.0	111 - 933	86	705 / 823	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
MLOC_58758.3	982	0.0	110 - 932	86	705 / 823	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC32758 ABC48253 ABC53022
AK248909.1	977	0.0	63 - 864	86	694 / 806	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_4849.1	1378	0.0	151 - 958	86	694 / 811	CUST_4869_PI390587928 CUST_35760_PI390587928	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00944 ABC00981 ABC01012 ABC26767 ABC26824 ABC26853 ABC53022
MLOC_81109.1	1237	0.0	280 - 1092	85	693 / 813	CUST_35720_PI390587928	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00828 ABC00837 ABC00926 ABC00944 ABC00981 ABC01012 ABC26767 ABC53022
MLOC_44067.1	1132	0.0	132 - 938	85	688 / 807	CUST_13391_PI390587928	ABC00006 ABC00194 ABC00422 ABC00425 ABC00433 ABC00828 ABC00926 ABC00949 ABC00981 ABC01012 ABC26767 ABC53022
AK250765.1	1054	0.0	80 - 883	85	683 / 804	None	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00433 ABC00606 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
AK372776	1096	0.0	85 - 878	84	670 / 797	CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_69498.1	1386	0.0	367 - 1086	85	619 / 728	CUST_35738_PI390587928	ABC00006 ABC00189 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC25177 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC53022
MLOC_29257.1	953	0.0	288 - 953	86	571 / 666	None	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC01012
MLOC_7198.1	839	0.0	228 - 839	85	523 / 612	None	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC25177
MLOC_41838.1	787	2e-165	261 - 783	87	454 / 523	CUST_9771_PI390587928	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC_4849.2	933	5e-157	322 - 808	87	425 / 487	None	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00981 ABC26767 ABC26824 ABC26853 ABC53022
MLOC_9033.1	1159	7e-156	714 - 1156	89	395 / 443	CUST_13360_PI390587928 CUST_7894_PI390587928	ABC00189 ABC00418 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00841 ABC26749 ABC26767 ABC32758 ABC53022
MLOC_58758.1	943	2e-137	415 - 914	84	422 / 500	None	ABC00006 ABC00347 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00960 ABC25177 ABC32758
MLOC_44927.1	838	6e-137	412 - 835	88	371 / 424	CUST_13341_PI390587928	ABC00006 ABC00189 ABC00194 ABC00422 ABC00425 ABC00620 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC26749 ABC26767 ABC31752 ABC32758
MLOC_44068.1	650	9e-135	192 - 650	86	393 / 459	None	ABC00189 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00841 ABC00926 ABC53022
MLOC_67012.1	762	1e-133	349 - 757	88	359 / 409	CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC_48202.1	675	2e-106	308 - 672	86	317 / 369	None	ABC00006 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00949
MLOC_67011.1	1952	3e-70	1726 - 1948	88	197 / 223	CUST_37480_PI390587928 CUST_26084_PI390587928 CUST_5616_PI390587928 CUST_35770_PI390587928	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022