- Probe CUST_5616_PI390587928
- Source Contig U35_506
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5616_PI390587928 | Hv_44K_v2 | GGTGTTTGTGTAATATCTGGTTATTTTTCAGATTAATCAAGGCATCTTTCTTCTTCCGCT | 594 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.628 | 5.257 | 1.388 | 0.719 | 0.177 | 0.249 |
| Raw | 1741.985 | 2766.428 | 578.510 | 516.878 | 39.577 | 63.208 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372776 | 1096 | 2e-24 | 1036 - 1095 | 100 | 60 / 60 | plus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| MLOC | MLOC_67011.1 | 1952 | 2e-24 | 1509 - 1568 | 100 | 60 / 60 | minus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| MLOC | MLOC_67012.1 | 762 | 2e-24 | 132 - 191 | 100 | 60 / 60 | minus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| JLOC1 | JLOC1_44207.1 | 1918 | 8e-25 | 1515 - 1574 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00857 | 253 | 3e-25 | 176 - 235 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00430 | 714 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC26853 | 485 | 1e-23 | 358 - 417 | 98 | 59 / 60 | plus | ABC26853 |
| Harvest21 | ABC00190 | 1139 | 1e-23 | 1034 - 1093 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00916 | 649 | 5e-23 | 23 - 78 | 100 | 56 / 56 | minus | |
| Harvest35 | U35_48117 | 392 | 3e-25 | 68 - 127 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_506 | 689 | 3e-25 | 595 - 654 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_401 | 1199 | 1e-23 | 1062 - 1121 | 98 | 59 / 60 | plus |
Contig Sequence (689 bp)
>U35_506 689 Hv_44K_v2 GCAACGGCGTCAAGTTCGGCGAGGCCGTGTGGTTCAGGCCGGCTCCCANATCTTCAGCGA GGGCGGCCTCGACTACCTCGGCAACCCCAGCCTCGTCCACGCCCAGAGCATCCTCGCCAT CTGGGCCTGCCAGGTGGTGCTCATGGGCGCCGTCGAGGGCTACCGCGTCGCCGGCGGCCC GCTCGGCGAGATAGTCGACCCGCTCTACCCCGGCGGCAGCTTCGACCCCCTGGGCCTCGC CGAGGACCCCGAGGCCTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGCCGCCTCGC CATGTTCTCCATGTTCGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCCTCGA GAACCTCGCCGACCACCTCGCCGACCCCGTCAACAACAACGCCTGGGCTTTCGCCACCAA CTTCGTTCCCGGCAAGTGAGCTCAGTCAGCTCAACCTCTAGCGCGCGCGCGCGCGCTTGG CCGACAACTTCATTGCTGATGGATGCTGCTGTGCTGCATGTCTTTCCGGACTGATAGATT TTGCATGTGAGGGCGAGTCGAGATGATGAGTTGGTGTGTGTACACTAAAAAGATGGTGTT TGTGTAATATCTGGTTATTTTTCAGATTAATCAAGGCATCTTTCTTCTTCCGCTTAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_506 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g52240.1 | 266 | 3e-88 | protein|chlorophyll A-B binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g42620.1 | 261 | 2e-90 | |
| Arabidopsis v10 | AT2G34420.1 | 265 | 5e-82 | | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |