- Probe CUST_16534_PI390587928
- Source Contig U35_258
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16534_PI390587928 | Hv_44K_v2 | ACTTTGTGTGTTTATTTGTATCATCATCATCATCGAGCGAGCGAGATGCCCTCTCCCTAG | 484 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.261 | 5.152 | 1.422 | 0.741 | 0.218 | 0.221 |
| Raw | 2487.440 | 4062.244 | 903.573 | 807.509 | 74.599 | 85.676 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22471.1 | 923 | 2e-24 | 114 - 173 | 100 | 60 / 60 | minus | ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022 |
| MLOC | MLOC_22471.2 | 1220 | 2e-24 | 11 - 70 | 100 | 60 / 60 | minus | ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022 |
| JLOC1 | JLOC1_15584.1 | 1302 | 8e-25 | 1056 - 1115 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00843 | 971 | 3e-25 | 785 - 844 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00839 | 729 | 3e-25 | 139 - 198 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00924 | 889 | 4e-24 | 832 - 889 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC39551 | 360 | 1e-23 | 44 - 103 | 98 | 59 / 60 | minus | ABC39551 |
| Harvest35 | U35_412 | 1172 | 3e-25 | 958 - 1017 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_258 | 544 | 3e-25 | 485 - 544 | 100 | 60 / 60 | plus |
Contig Sequence (544 bp)
>U35_258 544 Hv_44K_v2 AGGTGATCCACTCGCGGTGGGCGATGCTCGGAGCCCTCGGGTGCGTGTTCCCCGAGATCC TGTCCAAGAACGGCATCAAGTTCGGCGAGGCTGTCTGGTTCAAGGCCGGCGCGCAGATCT TCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCTGGTGCACGCGCAGAGCATCC TCGCCATCTGGGCATGCCAGGTGGTGCTCATGGGCTTCATCGAGGGCTACCGTGTTGGTG GCGGACCCCTTGGTGAGGGCCTCGACATCATCTACCCGGGTGGCGCCTTCGACCCATCGT CACCGGAAAGGGACCGGTTGAGAACCTCTTCGACCACATCGCCGACCCAGTGAACAACAA CGCGTGGGCCTTCGCCACCAACTTCGCCCCCGGAAGTTAAATGTGTTTAGCAGCCATCCG TCTGTCCATCGGACGAGATATGCATGTGTACTTGTACGTCGTGGATCAACGTGTAGCTGC ACGTACTTTGTGTGTTTATTTGTATCATCATCATCATCGAGCGAGCGAGATGCCCTCTCC CTAG
Homology of Contig U35_258 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g39610.2 | 220 | 9e-64 | protein|chlorophyll A-B binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g15290.1 | 264 | 7e-65 | |
| Arabidopsis v10 | AT3G27690.1 | 266 | 7e-64 | | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II light harvesting complex gene 2.3 | chr3:10256002-10256921 FORWARD LENGTH=266 |