barSeed - Barley Seed Development Database

Probe CUST_35749_PI390587928

Source Contig U35_412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35749_PI390587928	Hv_44K_v2	CAATGTAAATTAATTGAGCACAAGGTGTGCACGAGCGAATGGATGGAAGGATTGTGTGTC	1024	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.461	5.828	1.472	0.671	0.234	0.247
Raw	4481.807	6657.145	1358.221	1042.405	116.500	137.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248335.1	1078	2e-24	1019 - 1078	100	60 / 60	plus	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
MLOC	MLOC_22470.1	94	2e-24	27 - 86	100	60 / 60	plus	None
MLOC	MLOC_22471.1	923	2e-24	47 - 106	100	60 / 60	minus	ABC00189 ABC00194 ABC00432 ABC00433 ABC00617 ABC00628 ABC00926 ABC00951 ABC39551 ABC53022
JLOC1	JLOC1_15584.1	1302	8e-25	1123 - 1182	100	60 / 60	plus
Harvest21	ABC00839	729	3e-25	72 - 131	100	60 / 60	minus
Harvest21	ABC00189	1087	3e-25	1009 - 1068	100	60 / 60	plus	ABC00189
Harvest21	ABC00843	971	6e-22	852 - 911	97	58 / 60	plus
Harvest35	U35_412	1172	3e-25	1025 - 1084	100	60 / 60	plus

Contig Sequence (1172 bp)

>U35_412 1172 Hv_44K_v2
TGGGAACCCAAACACACACACACACACACCATCCTCCAGTTGATCTCACTGAGCTCGCAG
GCAGCCCCAGCCACCAGCGAAATGGCCGCGTCGGCGCTGCACCAGACGACCAGCTTCCTC
GGCACCGCCCCGCGGCGCGATGACCTCGTCCGCAGCGTCGGCGACTTCGGCGGCCGCATC
ACCATGCGCCGGACCGTCAAGAGCGCGCCCCAGAGCATCTGGTACGGCCCTGACCGTCCC
AAGTACCTGGGCCCGTTCTCCGAGCAGACCCCGTCGTACCTGACCGGCGAGTTCCCCGGC
GACTACGGGTGGGACACCGCGGGATTGTCGGCTGACCCAGAGACCTTCGCCAAGAACAGG
GAGCTGGAGGTGATCCACTCGCGGTGGGCGATGCTCGGAGCCCTCGGGTGCGTGTTCCCC
GAGATCCTGTCCAAGAACGGCATCAAGTTCGGCGAGGCTGTCTGGTTCAAGGCCGGCGCG
CAGATCTTCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCTGGTGCACGCGCAG
AGCATCCTCGCCATCTGGGCATGCCAGGTGGTGCTCATGGGCTTCATCGAGGGCTACCGT
GTTGGTGGCGGACCCCTCGGTGAGGGCCTCGACATCATCTACCCGGGTGGCGCCTTCGAC
CCACTTGGCCTCGCCGACGACCCCGACACAGCCGCCGAGCTCAAGGTCAAGGAGCTCAAG
AACGGCCGCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTCACCGGA
AAGGGACCGGTTGAGAACCTCTTCGACCACATCGCCGACCCAGTGAACAACAACGCGTGG
GCCTTCGCCACCAACTTCGCCCCCGGAAGTTAAATGTGTTTAGCAGCCATCCGTCTGTCC
ATCGGACGAGATATGCATGTGTACTTGTACGTCGTGGATCAACGTGTAGCTGCACGTACT
TTGTGTGTTTATTTGTATCATCATCATCATCGAGCGAGCGAGATGCCCTCTCCCTAGCTG
TGCGCAATGTAAATTAATTGAGCACAAGGTGTGCACGAGCGAATGGATGGAAGGATTGTG
TGTCAAAAAAAAAAAAAAAAAAAACTCCACATCAACCAGTGTCACGGCGTATATGGTATA
TACCCCATGAAAGGAAAAAAAATGAGGCAAGT

Homology of Contig U35_412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g39610.1	264	4e-172	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g15290.1	264	2e-178
Arabidopsis v10	AT3G27690.1	266	2e-153	\| Symbols: LHCB2.4, LHCB2.3, LHCB2 \| photosystem II light harvesting complex gene 2.3 \| chr3:10256002-10256921 FORWARD LENGTH=266