Tag: sequencing

Tablet has just been updated to version 1.12.03.26. BUG: Fixed a critical bug that was causing i/o problems with certain types of      BAM file.

Tablet has just been updated to version 1.12.02.06. NEW: The majority of colours used for the various visualization components are      now customizable. NEW: Cigar insertions can now be shown with a permanent overlay. This is in      place of the previous mouse-over highlight code. NEW: Added a snapshot history feature which tracks previously visited […]

Tablet has just been updated to version 1.11.11.01. NEW: All of the tables (in the control panel) can now have their contents copied      to the clipboard via right-click menu options. NEW: Two new colours are now available with the Read Type scheme. These      represent first in pair (mate in different contig) and second […]

Tablet has just been updated to version 1.11.08.10. NEW: Added a new colour scheme for displaying Read Groups in SAM and BAM files. NEW: Added a new control panel tab for viewing and editing Read Group colours. NEW: GFF files now support drag and drop loading. NEW: GFF files can now be specified on the […]

Tablet has just been updated to version 1.11.05.03. NEW: Consensus sequence data is now cached to disk which should result in less      memory being used with large contigs. CHG: Improved the mechanism used to search for read names across non-BAM      datasets (should be significantly faster). CHG: Simplified the Search UI so that all […]

Tablet has just been updated to version 1.11.03.14. BUG: OS X only. Added a temporary workaround for BAM files not being detected      with the latest (1.6.0_24) version of Java due to changes in gzip handling.

Tablet has just been updated to version 1.11.02.18. NEW: BAM files are now displayed with read count summaries, even before a contig      has been viewed, so long as the index file was generated with samtools       0.1.8 or higher. NEW: Tablet now uses the samtools executable for some tasks. The Options Dialog      allows […]

Tablet has just been updated to version 1.11.02.18. NEW: Various improvements to the pair-matching code should result in much faster      loading of paired-end data. NEW: Drawing paired-reads that include “link lines” is now faster. NEW: Added new right-click options to the main canvas that provides several      export-to-disk options for reads. NEW: Added a […]

Tablet has just been updated to version 1.10.10.06. BUG: OS X only. Temporary fix for loading problems on OS X 10.5.8 due to issues      with the SQLite driver. Performance will be lower than normal. 10.6.x seems      unaffected.

Tablet has just been updated to version 1.10.09.20. NEW: Added the ability to search for sequence strings within the consensus/reference. BUG: Added fixes for issues where reads in SAM files weren’t being paired      properly. BUG: Fixed a problem with read names that ended :1 or :2 not getting paired.