New in Tablet 1.11.02.18
Tablet has just been updated to version 1.11.02.18.
NEW: BAM files are now displayed with read count summaries, even before a contig has been viewed, so long as the index file was generated with samtools 0.1.8 or higher. NEW: Tablet now uses the samtools executable for some tasks. The Options Dialog allows for an alternative path to be set if the version distributed with Tablet doesn't run. NEW: The table column headers are now included in the output from the contig table's copy-to-clipboard option. NEW: Tablet now accepts a "view" command-line argument that allows you to specify a contig and position to jump to after loading (view:contigName:position). NEW: The Jump To Base Dialog now supports navigating to positions in contigs outwith the current contig. NEW: The search code can now ignore pads and 'N's when looking for matches. NEW: Added a new option to allow copying just part of a consensus/reference sequence to the clipboard. CHG: SAM files containing paired-read data must now be sorted before Tablet will accept them. BUG: Fixed array-out-of-bounds exceptions with SAM files containing paired-data. BUG: The wrong start position for a read was sometimes shown in search results with BAM files. BUG: The wrong name and position was being displayed for out-of-contig mates.