Tag: sequencing

Tablet has just been updated to version 1.10.09.10. NEW: Added support for paired-end data from SAM or BAM input files. NEW: Added graphical support for paired-end data via special paired-end packed      and stacked views. NEW: The information tooltip over reads now displays differently based on normal      or paired-end reads. NEW: Mouse-over on any […]

Tablet has just been updated to version 1.10.05.21. BUG: Fixed a critical bug that was resulting in some contigs hiding reads when      in packed mode.

Tablet has just been updated to version 1.10.05.18. NEW: Implemented a new, hopefully more robust, method of determining the version      number for update purposes. NEW: Added an option to set Picard’s SAMFileReader validation stringency to      lenient to suppress SamValidation errors. NEW: Added a parse-time option force DNA ambiguity codes to be read as […]

Tablet has just been updated to version 1.10.05.06. NEW: Added a new colouring scheme based on read direction/orientation. NEW: The overview displays can now be “subsetted”, forcing them to show only an      overview of whatever region you define for them. NEW: Variant highlighting (in red) can now be turned on or off for the […]

Tablet has just been updated to version 1.10.03.04. NEW: Added support for indexed BAM assemblies. NEW: Added a new navigation bar for moving the viewing window around within a      larger BAM assembly. NEW: Implemented background (multicore) thread support for calculating auxiliary      display data, meaning large contigs can now be viewed instantly. NEW: Various […]

Tablet has just been updated to version 1.10.02.08. NEW: Added (experimental) support for BAM, using in-memory only reading for now,      NOT indexed support. NEW: Support for most CIGAR operations, with the positions of Insertions being      tagged as features for now. NEW: Displayed consensus sequences now use 8 bytes per base less memory. NEW: […]

Tablet has just been updated to version 1.10.01.28. NEW: Added a right-click “save a summary of read information (per contig)”      option to the contigs table. NEW: Tablet can now read from http streams (supported on the command line and      the Open Assembly dialog). NEW: Tablet can now read from compressed gzip data streams […]

Tablet has just been updated to version 1.09.12.14. NEW: Added an option to export coverage summary information to a file on disk. NEW: Added an explicit cancel option to the progress dialogs (even though      closing the dialog did cancel them anyway). NEW: Added a right-click “copy-to-clipboard” option for the contigs table data. CHG: The […]

Tablet has just been updated to version 1.09.12.08. NEW: Tablet has now appeared in a Bioinformatics publication so we’ve moved the      version number to 1.xx NEW: Packing data on contigs with very high read coverage is now significantly      faster. NEW: All tables now show tooltips with more readable information about the row      […]

Tablet has just been updated to version 0.09.11.25. NEW: Added support for finding reads by name (across current or all contigs),      with graphical pinpointing. CHG: The “Contigs Browser” is now the “Control Panel”, containing contig,      features, and search tabs.