- Probe CUST_8722_PI390587928
- Source Contig U35_14304
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8722_PI390587928 | Hv_44K_v2 | TTGAACCTTAATGCGTGGAGTCGATGGATGATGTATTGTATTTAATGAGATATGTTACTG | 1294 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.035 | 1.238 | 1.469 | 1.363 | 0.699 | 0.654 |
| Raw | 14664.500 | 27407.230 | 28377.600 | 40874.133 | 7378.217 | 7561.283 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28160.1 | 929 | 2e-24 | 636 - 695 | 100 | 60 / 60 | plus | ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963 |
| MLOC | AK372031 | 1366 | 3e-21 | 1255 - 1311 | 98 | 56 / 57 | plus | ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC44562 ABC45569 ABC46334 ABC49963 |
| MLOC | MLOC_29781.1 | 258 | 3e-21 | 96 - 152 | 98 | 56 / 57 | plus | ABC01497 ABC05171 ABC06188 ABC12128 ABC12988 ABC13209 ABC16799 ABC33341 ABC34989 ABC38349 ABC44562 ABC46334 |
| JLOC1 | JLOC1_18933.1 | 795 | 8e-25 | 635 - 694 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19781.1 | 241 | 2e-21 | 96 - 152 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC06184 | 601 | 3e-25 | 493 - 552 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46334 | 608 | 1e-23 | 48 - 107 | 98 | 59 / 60 | minus | ABC46334 |
| Harvest21 | ABC06190 | 713 | 1e-23 | 611 - 670 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14304 | 1403 | 3e-25 | 1295 - 1354 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14305 | 715 | 1e-23 | 611 - 670 | 98 | 59 / 60 | plus |
Contig Sequence (1403 bp)
>U35_14304 1403 Hv_44K_v2 CCCTCACCCCTAACCACATCCCCTCGCCCCTCGACTGCTGCAGGCCCCGAAATTAGCGTC GCCGGATCTGGCGGCTCCCTGCTCCTCCTCCCCTCGCCAATCCGGCGATCCCCCACCCAC CTGATCAGCCCGCACACCATGCAGTCCAAGCCCGACCCCCTCCCCGCGCCGCCTCGCAAT GCCGGGTCTCACTGCCGCCGAGCAGGACGCCGTCTCGCTGGTGCGCCGCGTCGCCCGGGT CCTCAACCGCCGGATCTCCGAGGAGGACGCCCTGTGAGTCCGCCGCCCTAACCCCCCTCT AGGTCGGTCCGGTAGACGCTCCGTCTGTACGCCCGCGGTGGTCTCTGATCTCAGTTCCGC GAAAATGGCGGTGGAAATTTCGGGCCCGTCTGGTGCCAGATGCGGCGTGGTCCGCGGAAC CGGAGCAGGTCTCTGTGTGTTCGCTGGCGTGCGTTGAATGCGAGAGCAGAGATGGGAAGG GATGAGCAAGCCTGCACTTCTCCACGACCTGCGTTAGCGAGCATCACAACCAGGGGTGGT GCAGAAACAGAGATAGTTAGCTGAGTTAGAAACAGAGATAGTTAACAGGTTATGGTTGAG GACCGGTGTCAGTCTGTTAGTATTTGGGAACTATGATCCATGGATTATTTTGTTCATAAA TCTGTTCCATGTACGAATGAAATATTTATGATTTTGAATTTTTGGAAAGCTTTATGAATG TGTATGTTATATATTTGAGCAGTGAACATACTGTACTTATATAGAAATAATAGTTTTCAG TTTTCTCTGTAACATGCATGCATATTCTGGCATGTTTTCCAGGTGGCCCATTGCTTCTGA TGCATTTTTCTTCAAACTGTAGATCGATACTGATTTGTTTAACCTGGTATTCATTTGAAT GCAGCAACAGTGGCATAATAGCCATGCGTTGCTCATGTCGTCCATCTCTTTTTGATGCAT GTCGGTGTGCAGTTTTGTGCCTGATGTCCTCGCTCTATCCCTGCAATCAGTGCTGGCGGT CCATCCGGCCACCTCCTCCGAATAACATGAAGTGCGGGTGTGATTCCATGTTCTTCTTCT GTACATTTTCAGTAGGCAACAAAAGACGGCAATGGCAAGAGCATATTGTGCAGAGAAAGA GGATGAGAAGAAACTTGGGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGATT GTGCACTTGTTGGGTCCTTTTTCTGTGTACTTGTACTTATAGTAGTATTCTATTGTGCAC ATGTAAAATTATTTTGATGTGTCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTCGATG GATGATGTATTGTATTTAATGAGATATGTTACTGAAATGAAATAGACATTTTATTTGCAA TCTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_14304 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |