barSeed - Barley Seed Development Database

Probe CUST_2528_PI390587928

Source Contig U35_14286

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2528_PI390587928	Hv_44K_v2	AACCTTAATGCGTGGAGTCGGTCGATGGTGTATTGTATTTAATGAGATATGTTACTGAAA	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362032	681	2e-24	596 - 655	100	60 / 60	plus	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC	AK366452	692	2e-24	612 - 671	100	60 / 60	plus	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC06191 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13360 ABC13836 ABC16799 ABC19962 ABC21351 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
MLOC	MLOC_7526.1	208	2e-24	32 - 91	100	60 / 60	minus	ABC01497 ABC05171 ABC05172 ABC05174 ABC06188 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC45569 ABC46334
JLOC1	JLOC1_4966.1	229	8e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC06188	694	3e-25	597 - 656	100	60 / 60	plus	ABC06188
Harvest21	ABC46334	608	6e-22	45 - 104	97	58 / 60	minus	ABC46334
Harvest21	ABC06190	713	6e-22	614 - 673	97	58 / 60	plus
Harvest35	U35_14289	1925	3e-25	1849 - 1908	100	60 / 60	plus
Harvest35	U35_14286	605	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_14305	715	6e-22	614 - 673	97	58 / 60	plus

Contig Sequence (605 bp)

>U35_14286 605 Hv_44K_v2
GCGAAATTAGTGTCGCCGGATCTGGCGGCTCCCTGCTCCTCCTCCCCATGCCAATCCGGC
GATCCCCCACCCACCTGATCAGCCCGCGCACCATGCAGTCCAAGCCCGGCCCCCTCCCCG
CGCCGCCTCGCAATGCCGGGCCTCGCTGCCGGCGAGCAGGACGTCGTCTCGCTGGTGCGC
CGCGTCGCCCGGGCCCTCAACCGCCGGATCTCCGAGGAGGACGCCATTGCTGGCGGTCCA
TCCGGCCACCTCCTCCGAATAACATGAAGTGCGGGTGTGATTCCATGTTCTTCTTCTGTA
CATTTTCAGTAGGCAAGAAAAGTGGCAAGAGCATATTGTGCAGAGAAAGAGGATGAGAAG
AAACTTGGGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGATTGTGCACTTGT
TGGGTCCTTTTTCTGTGTACTTGCACTTATAGTAGTATTCTATTGTGCACATGTAAAATT
ATTTTGATGTGTCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTCGGTCGATGGTGTAT
TGTATTTAATGAGATATGTTACTGAAATAAAATATACATTTTATTTGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None