barSeed - Barley Seed Development Database

Probe CUST_2493_PI390587928

Source Contig U35_14299

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2493_PI390587928	Hv_44K_v2	TTGAACCTTAATGCGTGGAATCGGTGAATGATGTATTTTATTTGATGTGATATGCTACTG	326	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250595.1	856	2e-24	773 - 832	100	60 / 60	plus	ABC01494 ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05304 ABC06188 ABC12127 ABC12128 ABC12988 ABC13209 ABC13836 ABC16799 ABC19962 ABC21351 ABC21924 ABC24067 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC44948 ABC45569 ABC46334 ABC49963
JLOC1	JLOC1_20681.1	240	8e-25	128 - 187	100	60 / 60	plus
Harvest21	ABC30081	554	3e-25	458 - 517	100	60 / 60	plus	ABC30081
Harvest21	ABC05171	858	3e-25	754 - 813	100	60 / 60	plus	ABC05171
Harvest35	U35_14299	431	3e-25	327 - 386	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_14299 431 Hv_44K_v2
GAGGGATGCTCGGGTGCCAAGCTGCCGCCGTCGCTCGTCGCCCTCTGCAAGGCCGCGGAG
CGCTGAAGCGTCCGGCTCTTCTTCCTCCCCCGCGGCATGACCAGGAGGGCGCAGAACCGC
TCATGGCACGACAACAGGTGGCAATGGCAAGAGCATATTGTGCAGAGGAAGAGGATGAGA
AGAAACTTGTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGCGACTGTGCATTT
GTTGGGTCCTTTTTCTGTGCACTTGCACTTGTAGAAGTATCCTGTTGTGTACATGTAAAA
TTATTTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGTGGAATCGGTGAATGATGT
ATTTTATTTGATGTGATATGCTACTGAAATGAAATATACAATTTATTTGCAATCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None