barSeed - Barley Seed Development Database

Probe CUST_2110_PI390587928

Source Contig U35_38977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2110_PI390587928	Hv_44K_v2	AACCTTAATGCGTGGAGTCAGTGGATGATGTATTGTATTTGATGTGATATGCTATTGAAA	39	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252837.1	2740	3e-21	2660 - 2719	97	58 / 60	plus	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC05377 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC49963
MLOC	AK250846.1	2265	3e-21	2185 - 2244	97	58 / 60	plus	ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849
MLOC	MLOC_30440.1	361	3e-21	273 - 332	97	58 / 60	plus	ABC01497 ABC05171 ABC05172 ABC05173 ABC05174 ABC06188 ABC12127 ABC12128 ABC12988 ABC12989 ABC13209 ABC13836 ABC16799 ABC19962 ABC30081 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC46334 ABC49963
JLOC1	JLOC1_20141.1	335	2e-21	259 - 318	97	58 / 60	plus
Harvest21	ABC34978	423	3e-25	40 - 99	100	60 / 60	minus	ABC34978
Harvest21	ABC44803	528	1e-23	38 - 97	98	59 / 60	minus
Harvest21	ABC01497	900	1e-23	824 - 883	98	59 / 60	plus	ABC01497
Harvest21	ABC45569	645	6e-22	44 - 103	97	58 / 60	minus	ABC45569
Harvest35	U35_38977	423	3e-25	40 - 99	100	60 / 60	minus
Harvest35	U35_14309	1300	1e-23	1204 - 1263	98	59 / 60	plus
Harvest35	U35_46038	645	6e-22	44 - 103	97	58 / 60	minus

Contig Sequence (423 bp)

>U35_38977 423 Hv_44K_v2
CCTTTTTTTTTTTTTTTTGCAAATAAAATGTATATTTCATTTCAATAGCATATCACATCA
AATACAATACATCATCCACTGACTCCACGCATTAAGGTTCAACACCTAACAAGGACACAT
CAAAATAATTTTACATGTGCACAACAGAATACTTGTGCAAGTGCACAGAAAAAAGGTTCC
AACAAATGCACAATCGCACATAAAGAGAGTTCCACAAAGATTGAATGAGAACCATAAGTT
TCTTCTCATCCACGTCCTCTGCACAATATGCTCTTGCCATGGCCGCCTGCAAGAAGAAAA
TGATGGTAAGGCTTTCAGACCAAGGAAACTAGTAAAATTGCACGCACGATAACCAATGAT
AAAATAGTAAAAAGTTGTTTTCTTACTCATCTAAATTTTTCATTTTTTTGTTTATTAAAG
ATG

Homology of Contig U35_38977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None