barSeed - Barley Seed Development Database

Probe ABC00096

Source Contig ABC00096

barSeed

Links

Affymetrix Source Sequence (797 bp)

>ABC00096 797
GCCCCACTCCACAGCTCACCAACCCTCTCGCCGGAGTCTAGCGAAGCAAGCAAGGTANCC
AGNAANATGGACGGCAGCAAGGCGAAGAAGGTGGCGGCGAAGAAGCTGGGCGGCCCGAGG
AAGAAGGGGGGACCAAAANCATAAAGGCCGGCCTCCAGTTCCCCGTCGGCCGCATCGGCC
GCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCG
CCGCCGTCCTCGAGTACCTCGCAGCCGAGGTGCTGGAGCTGGCCGGCAACGCGGCCAAGG
ACAACAAGAAGACCCGCATCGTACCGAGGCACCTGTTGCTGGCCATCCGCAACGACCAGG
AGCTCGGGAGGCTGCTTTCCGGGGTCACCATCGCCCACGGGGGCGTCATCCCCAACATCA
ACCCGGTGTTGCTCCCCAAAAAGTCCCCCGAAAAGGCCGAAAAGACCGAAAAGGCCGGCG
CCGGCGCCAAGTCGCCCAAAAAGGCCGCCAAGTCCCCCAAGAAGGCTCCCAAGAAGGCCC
CCAAGGCCTAGATCCGGGCGGGCGGAACGGCCGCGCAGACGAAGCTGAACTGACGATGCT
CCGTCGGCCCTCGCGTGCCTAGCGTCCCTGTTAAGTTAGCTATGTTATTATGGTGTGTTC
CCAGGGAGTGTTAAAGCTTGCACTTTTGCTTTGCCCCCGCCATGTAATCCTGAACGAAGA
GGAAACCTCTGGCTTCCTCTGTTCCTATGAACCAATCTGGTATCCAATGCAGCGCTTGCT
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252601.1	938	0.0	20 - 803	97	759 / 784	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869
MLOC_33483.1	1189	0.0	511 - 1027	97	503 / 517	CUST_1269_PI390587928	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869
MLOC_33483.3	512	0.0	1 - 512	97	497 / 512	None	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869
AK250581.1	781	0.0	34 - 638	87	552 / 635	CUST_21691_PI390587928 CUST_39452_PI390587928 CUST_39507_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
AK366376	1562	2e-125	65 - 437	88	334 / 378	CUST_39473_PI390587928 CUST_35203_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
AK251633.1	761	2e-125	68 - 440	88	334 / 378	CUST_35203_PI390587928 CUST_39473_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
AK251986.1	744	2e-124	64 - 407	90	310 / 344	CUST_39515_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK251852.1	741	3e-123	97 - 460	89	325 / 367	CUST_39512_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK252060.1	846	5e-121	114 - 481	88	324 / 368	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK376310	633	2e-119	64 - 407	89	307 / 344	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK369442	685	8e-119	92 - 398	92	282 / 307	CUST_39489_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584 ABC44597
AK374121	736	1e-117	101 - 444	89	306 / 344	CUST_33969_PI390587928 CUST_39472_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC42929
MLOC_24886.1	550	1e-117	114 - 484	87	328 / 376	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
AK373742	770	4e-117	72 - 445	87	330 / 379	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK374191	752	1e-116	79 - 442	87	321 / 367	CUST_39476_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK250752.1	723	5e-116	79 - 449	87	327 / 376	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
AK252540.1	738	2e-115	131 - 437	91	280 / 307	CUST_39525_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00239 ABC00286 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584
AK248534.1	712	2e-115	74 - 446	87	328 / 378	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
MLOC_33483.2	607	6e-95	224 - 445	95	211 / 222	CUST_1269_PI390587928	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869
MLOC_38467.1	1710	5e-106	1406 - 1710	90	273 / 305	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.3	1144	5e-106	840 - 1144	90	273 / 305	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.2	1688	5e-106	1384 - 1688	90	273 / 305	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_55495.1	662	6e-105	228 - 542	89	279 / 315	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK248367.1	737	3e-103	168 - 553	84	326 / 386	CUST_39486_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC31767 ABC39313
MLOC_81367.2	510	4e-102	130 - 510	84	347 / 411	CUST_21691_PI390587928 CUST_39452_PI390587928	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
AK373523	676	2e-99	182 - 477	89	263 / 296	CUST_39527_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_23198.1	524	2e-99	248 - 521	91	249 / 274	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584
MLOC_68568.2	976	1e-97	194 - 489	89	262 / 296	CUST_39524_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00494 ABC00648 ABC00709 ABC00869
MLOC_68568.1	689	1e-97	195 - 490	89	262 / 296	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00494 ABC00648 ABC00709 ABC00869
AK365600	715	2e-94	190 - 485	88	260 / 296	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_81367.1	756	2e-89	287 - 641	84	322 / 385	CUST_39507_PI390587928 CUST_39452_PI390587928 CUST_21691_PI390587928	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208
MLOC_81367.3	292	4e-87	12 - 292	88	254 / 290	None	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869
MLOC_50368.1	374	3e-83	1 - 258	88	228 / 258	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_19904.1	278	2e-80	14 - 241	90	206 / 228	None	ABC00085 ABC00096 ABC00648 ABC00869
MLOC_72638.2	773	3e-78	236 - 535	84	253 / 300	None	ABC00016 ABC00096 ABC00119 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
MLOC_68554.1	197	5e-76	1 - 197	93	183 / 197	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_31809.1	177	1e-71	1 - 177	94	167 / 177	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_33596.1	622	5e-71	381 - 622	87	210 / 242	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597 ABC47465
MLOC_29188.2	487	2e-70	1 - 223	88	197 / 223	None	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584
MLOC_57143.1	818	2e-64	338 - 640	82	247 / 303	None	ABC00016 ABC00096 ABC00119 ABC00286 ABC00321 ABC00350 ABC00412 ABC00550 ABC00709 ABC44597
MLOC_42937.1	386	2e-64	188 - 384	89	176 / 197	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_48186.1	317	9e-64	95 - 317	87	193 / 223	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00412 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259
MLOC_33635.1	424	1e-62	199 - 422	86	193 / 224	None	ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00412 ABC00414 ABC00709 ABC00869 ABC17259
MLOC_20478.1	198	4e-62	22 - 198	91	161 / 177	None	ABC00096 ABC00648
MLOC_32445.1	261	7e-60	78 - 257	90	162 / 180	CUST_14106_PI390587928	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00869 ABC34584
AK374620	653	3e-58	172 - 447	82	225 / 276	CUST_39519_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00671 ABC00709 ABC00869
AK249306.1	821	1e-57	232 - 428	87	172 / 197	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00412 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259 ABC31767 ABC39313
MLOC_29188.3	531	5e-56	7 - 204	87	172 / 198	CUST_39525_PI390587928 CUST_25890_PI390587928	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584
MLOC_35155.1	682	7e-55	169 - 420	82	207 / 252	CUST_39469_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC44597
MLOC_35005.1	648	9e-54	368 - 545	88	157 / 178	CUST_39476_PI390587928	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00869 ABC34584
MLOC_29188.1	718	3e-53	133 - 315	87	160 / 183	CUST_39525_PI390587928 CUST_25890_PI390587928	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584