- Probe CUST_39527_PI390587928
- Source Contig U35_13907
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39527_PI390587928 | Hv_44K_v2 | CTAATGGTGTCGATGTAATCTTTGCTGTTAAGAGTAATGTCAGAAATCACTCTGATCCGG | 604 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.032 | 1.335 | 1.576 | 1.094 | 0.550 | 0.427 |
| Raw | 13229.800 | 26771.967 | 27634.300 | 29570.403 | 5254.617 | 4499.817 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373523 | 676 | 2e-24 | 617 - 676 | 100 | 60 / 60 | plus | ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 |
| MLOC | MLOC_25856.1 | 978 | 7e-23 | 564 - 623 | 98 | 59 / 60 | minus | ABC00028 ABC00054 ABC00076 ABC00118 ABC00167 ABC00188 ABC00412 ABC00414 ABC00709 ABC00869 |
| MLOC | MLOC_25856.2 | 861 | 7e-23 | 449 - 508 | 98 | 59 / 60 | minus | ABC00028 ABC00054 ABC00076 ABC00118 ABC00167 ABC00188 ABC00412 ABC00414 ABC00709 ABC00869 |
| JLOC1 | JLOC1_17614.1 | 607 | 4e-23 | 310 - 369 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00076 | 681 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus | ABC00076 |
| Harvest35 | U35_13907 | 686 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus |
Contig Sequence (686 bp)
>U35_13907 686 Hv_44K_v2 CCGCAATCCACCAACCACCATCACCAAATCTCTCTGCCCCTATCCAGCTTTCTCTCAAAA GCTCCGTCTGTCAGCAATGGAGGTTTCAGGCGCTGCAGCGAAGGGAAAGAAGGGCGCTGC AGGGCGCAAGGCCGGCGGCCCGAGGAAGAAGTCAGTGACGCGGTCCGTGAAGGCCGGGCT CCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAGAAGGGCCGGTACGCGCAGCGCGT CGGCACCGGTGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTGGCTGCCGAGCTGCT GGAGCTCGCCGGGAACGCCGCCAAGGACAACAAGAAGAGCCGCATCATCCCGCGCCACCT GCTGCTCGCCGTCAGGAACGACGAGGAGCTCGGAAAGCTGCTGGCCGGCGTCACCATCGC GCACGGCGGCGTGATCCCCAAGATCAACCCGGTGCTGCTCCCCAAGAGGACCGCGGAGAA GGAGGGCAAGGGGCCCAAGTCCCCCAAGAAGGCCACCAAGTCCCCGAAGAAGGCCACCAA GGCTTAGGAACACGCATAGGTTGATGTAGGTTGCTTAATGTCTGTAACATTGGTCGTTGT TTGGCTAATGGTGTCGATGTAATCTTTGCTGTTAAGAGTAATGTCAGAAATCACTCTGAT CCGGAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_13907 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |