- Probe CUST_39525_PI390587928
- Source Contig U35_13909
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39525_PI390587928 | Hv_44K_v2 | CAAGCCCGTAAGGTCTGTATTTTGTGCTACTTGATTTATGTGGGGAATGGCTACAAAAAA | 636 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.164 | 1.340 | 1.273 | 1.086 | 0.603 | 0.517 |
| Raw | 37068.700 | 67716.867 | 55471.133 | 71321.100 | 14496.000 | 13610.610 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252540.1 | 738 | 9e-22 | 650 - 704 | 100 | 55 / 55 | plus | ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00239 ABC00286 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584 |
| MLOC | MLOC_29188.1 | 718 | 9e-22 | 528 - 582 | 100 | 55 / 55 | plus | ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584 |
| MLOC | MLOC_29188.3 | 531 | 9e-22 | 417 - 471 | 100 | 55 / 55 | plus | ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584 |
| JLOC1 | JLOC1_19471.1 | 620 | 5e-22 | 439 - 493 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC00239 | 206 | 1e-23 | 137 - 196 | 98 | 59 / 60 | plus | ABC00239 |
| Harvest21 | ABC31628 | 550 | 2e-22 | 77 - 131 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC00745 | 699 | 2e-22 | 635 - 689 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC00095 | 727 | 2e-22 | 637 - 691 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_13909 | 742 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36546 | 550 | 2e-22 | 77 - 131 | 100 | 55 / 55 | minus |
Contig Sequence (742 bp)
>U35_13909 742 Hv_44K_v2 CATTCCGAACAAGCACCGCCGCCACCGCATCTCAACTAGTTTCCAGTTCGCCGGAGAAGA AGAAAGATGGCCGGAAGGAAGGGCGGAGACAGGAAGAAGGCGGTGACCCGCTCCGTGAAG GCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTGAAGAAGGGCCGCTACGCC CAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTAGAGTACCTCGCCGCC GAGGTCCTGGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAGACCCGCGTCGTCCCG CGCCACCTGCTTCTCGCCGTCCGCAACGACCAGGAGCTCGGCAAGCTGCTCTCCGGCGTG ACCATCGCCCACGGCGGCGTGATCCCCAACATCAACTCCGTGCTGCTCCCCAAGAAGTCC GCCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGGCCGCCACCAAGTCCCCC AAGAAGAAGGCCGCCGCCACCAAGGAGTAGGCGCCCCGTAGCCTAGCCTGCACTGCTTAG TTCGATACCAGGGAGAAGATGATGGGACTTTTGATTGAGTGGATCATGTGTATGTAAGTG CCTAGTCTGTAGTGGCTCTTTCATCACTTCGATGAGCAAGCCCGTAAGGTCTGTATTTTG TGCTACTTGATTTATGTGGGGAATGGCTACAAAAAAAAAAAAAAACTACAGATGCGATCC TTTACAAAAAAAAAAAAAAAAA
Homology of Contig U35_13909 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |