barSeed - Barley Seed Development Database

Probe ABC00154

Source Contig ABC00154

barSeed

Links

Affymetrix Source Sequence (709 bp)

>ABC00154 709
GCCCAATCTCACCGACTCCGGCCATCTCTCCGGCGACCACAGGAGCAGCATCCCATCCTC
CGAAGATGGCCACAGCGGCAGGCGGCGGCGGGAGGGGCAAGCCGAAGGGGAGCAAGTCGG
TGTCGCGGTCGGTGAAGGCGGGCCTGCAGTTCCCTGTTGGCCGCGTCGCCCGGCACCTCA
AGGTCGGCCGGTACGCGCAGCGCGTGGGCGCGGGCGCCCCCGTCTACCTCTGCGCCGTCC
TCGAGTACCTCGCCGCCGAGGCCCTGGAGCTGGCCGGCAACGCGGCGCGCGACAACAAGA
AGACCCGGATCACGCCGCGCCACATCCAGCTCGCCGTCCGCAACGACGAGGAGCTCAGCC
GGCTGCTCGGCGGCGTCACCATCGCCGCCGGCGGCGTCCTGCCCAACATCAATTCCGTCC
TCCTCCCCAAGAAGGCCGGCAAGGCCGCCGCCGGCACCGGCGGGTCCGCGTCCCAGTCCC
AGGAGTTCTAGAGCCTTCGAGATCTGAAAAATAGCGTGGTCCGGCGATGATGTTTTTAGT
ATGCTGGTAGATTAGTTCTCGTTGGTTCATGTATCGAGGTTGTATCTCGATGGAATGGAA
TGCTTGCAATCTGGTTCATGTTTTCTGCCTGTGATTTGCCCATGTCAATCTGAATGAAAC
TGTTTTTTTTTCTTGCTCTGACAGTAAAAAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364340	651	0.0	20 - 651	99	628 / 632	None	ABC00145 ABC00154 ABC00167 ABC00188 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
MLOC_78704.1	568	0.0	131 - 568	99	436 / 439	CUST_15493_PI390587928	ABC00154
MLOC_35155.1	682	7e-109	147 - 480	88	294 / 334	CUST_39469_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC44597
MLOC_41855.1	234	9e-98	1 - 230	95	218 / 230	None	ABC00154
MLOC_72638.2	773	2e-94	231 - 592	84	305 / 363	None	ABC00016 ABC00096 ABC00119 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
AK374191	752	6e-85	115 - 435	84	271 / 321	CUST_39476_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK251852.1	741	3e-83	133 - 453	84	270 / 321	CUST_39512_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK251986.1	744	1e-81	80 - 400	84	269 / 321	CUST_39515_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK376310	633	1e-81	80 - 400	84	269 / 321	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK369442	685	4e-81	71 - 407	83	282 / 340	CUST_39489_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584 ABC44597
AK252060.1	846	6e-80	130 - 453	83	271 / 325	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK373742	770	6e-80	118 - 438	84	269 / 322	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
MLOC_55495.1	662	7e-79	239 - 557	83	266 / 319	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK250581.1	781	7e-74	139 - 463	82	267 / 325	CUST_39507_PI390587928 CUST_39452_PI390587928 CUST_21691_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
MLOC_38467.1	1710	1e-72	1434 - 1696	86	226 / 264	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.3	1144	1e-72	868 - 1130	86	226 / 264	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.2	1688	1e-72	1412 - 1674	86	226 / 264	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK374797	691	2e-65	157 - 475	81	259 / 320	CUST_39511_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_33596.1	622	1e-62	384 - 622	85	203 / 239	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597 ABC47465
AK371572	872	2e-59	345 - 643	81	242 / 300	None	ABC00028 ABC00054 ABC00076 ABC00118 ABC00145 ABC00154 ABC00167 ABC00188 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00656 ABC00709 ABC00869 ABC17259 ABC31767 ABC39313
MLOC_25652.1	512	2e-59	201 - 499	81	242 / 300	None	ABC00028 ABC00054 ABC00076 ABC00118 ABC00145 ABC00154 ABC00167 ABC00188 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00656 ABC00709 ABC00869 ABC17259
MLOC_65728.2	779	2e-55	206 - 503	80	238 / 298	None	ABC00016 ABC00119 ABC00154
MLOC_65728.3	883	2e-55	385 - 682	80	238 / 298	CUST_35201_PI390587928	ABC00016 ABC00119 ABC00154