- Probe CUST_15493_PI390587928
- Source Contig U35_36570
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15493_PI390587928 | Hv_44K_v2 | ATCTGGTTCATGTTTTCTGCCTGTGATTTGCCCATGTCAATCTGAATGAAACTGTTTTTT | 34 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.863 | 1.690 | 1.038 | 0.883 | 0.442 | 0.405 |
| Raw | 14357.567 | 20185.050 | 10963.817 | 14622.107 | 2536.973 | 2540.073 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78704.1 | 568 | 2e-24 | 149 - 208 | 100 | 60 / 60 | minus | ABC00154 |
| JLOC1 | JLOC1_52452.1 | 528 | 8e-25 | 109 - 168 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00154 | 709 | 3e-25 | 609 - 668 | 100 | 60 / 60 | plus | ABC00154 |
| Harvest35 | U35_36570 | 526 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus |
Contig Sequence (526 bp)
>U35_36570 526 Hv_44K_v2 TTTTTTTTTTTTTTTTTACTGTCAGAGCAAGAAAAAAAAACAGTTTCATTCAGATTGACA TGGGCAAATCACAGGCAGAAAACATGAACCAGATTGCAAGCATTCCATTCCATCGAGATA CAACCTCGATACATGAACCAACGAGAACTAATCTACCAGCATACTAAAAACATCATCGCC GGACCACGCTATTTTTCAGATCTCGAAGGCTCTAGAACTCCTGGGACTGGGACGCGGACC CGCCGGTGCCGGCGGCGGCCTTGCCGGCCTTCTTGGGGAGGAGGACGGAATTGATGTTGG GCAGGACGCCGCCGGCTGAGCTCCTCGTCGTTGCGGACGGCGAGCTGGATGTGGCGCGGC GTGATCCGGGTCTTCTTGTTGTCGCGCGCCGCGTTGCCGGCCAGCTCCAGGGCCTCGGCG GCGAGGTACTCGAGGACGGCGCAGAGGTAGACGGGGGCGCCCGCGCCCACGCGCTGCGCG TACCGGCCGACCTTGAGGTGCCGGGCGACGCGGCCAACAGGGAACT
Homology of Contig U35_36570 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |