barSeed - Barley Seed Development Database

Probe ABC44597

Source Contig ABC44597

barSeed

Links

Affymetrix Source Sequence (588 bp)

>ABC44597 588
CCCGTCGGCCGCATCGCGCGNTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCC
GGCGCCCCCGTNTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTGGAGCTG
GCGGGGAACGCGGCGCGGGACAACAAGAAGACCCGGATCGTGCCGCGGCACATCCAGCTG
GCGGTGCGCAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGACGATCGCCAACGGC
GGCGTGATGCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGGCCAAGGGGGAG
ATCGGGTCCATCTCCCAGGAGTTCTGAGCGCGCGCTGCTACAAGGCTAAAGGAGGGGCTG
CCCTGTCACTCATGTCTGGCTGACGACGATGTTCATCTGAAGTTTTTGGTTGGGTTGGGG
TGTGTTTTGGGAGTCTGAATCTCGTCATGGAAAAAACCTTGGGTGTCTTCTGAGCTCTGC
TCGCGGTTGAATGAATGAGTCGGTCGATCAGTAGAAGAGAGGAAACATATACATGTGGTT
TCTTAATATGCGAAAATGATGTTTGGTTGTTAAAAAAAGAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_72638.2	773	0.0	1 - 517	99	515 / 517	None	ABC00016 ABC00096 ABC00119 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
MLOC_72638.1	492	0.0	22 - 484	99	463 / 465	CUST_39492_PI390587928	ABC00350 ABC44597
MLOC_35155.1	682	6e-99	187 - 514	87	286 / 330	CUST_39469_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC44597
MLOC_57143.1	818	5e-90	356 - 688	85	282 / 333	None	ABC00016 ABC00096 ABC00119 ABC00286 ABC00321 ABC00350 ABC00412 ABC00550 ABC00709 ABC44597
AK250581.1	781	2e-78	178 - 463	85	245 / 288	CUST_21691_PI390587928 CUST_39452_PI390587928 CUST_39507_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
AK364340	651	6e-74	170 - 457	84	243 / 289	None	ABC00145 ABC00154 ABC00167 ABC00188 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
MLOC_64939.2	900	8e-73	266 - 527	86	226 / 264	None	ABC00016 ABC00119 ABC00188 ABC00321 ABC00350 ABC00550 ABC00709 ABC03002 ABC31695 ABC44597
AK369442	685	1e-71	110 - 395	84	240 / 287	CUST_39489_PI390587928	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC34584 ABC44597
AK251986.1	744	2e-69	119 - 400	83	237 / 284	CUST_39515_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK252060.1	846	2e-69	169 - 453	83	239 / 287	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK374797	691	2e-68	196 - 494	82	248 / 301	CUST_39511_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_33596.1	622	2e-68	384 - 622	86	208 / 241	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597 ABC47465
MLOC_38467.1	1710	1e-66	1434 - 1710	83	232 / 279	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.3	1144	1e-66	868 - 1144	83	232 / 279	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
MLOC_38467.2	1688	1e-66	1412 - 1688	83	232 / 279	CUST_27897_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK251852.1	741	2e-64	172 - 453	82	234 / 284	CUST_39512_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
MLOC_55495.1	662	2e-63	239 - 525	82	237 / 289	None	ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK376310	633	8e-63	119 - 400	82	233 / 284	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK373742	770	4e-61	157 - 438	82	232 / 284	None	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
AK374191	752	2e-59	154 - 435	81	231 / 284	CUST_39476_PI390587928	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
MLOC_81367.2	510	4e-56	305 - 510	86	179 / 208	CUST_39452_PI390587928 CUST_21691_PI390587928	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597