barSeed - Barley Seed Development Database

Probe ABC00016

Source Contig ABC00016

barSeed

Links

Affymetrix Source Sequence (735 bp)

>ABC00016 735
CAGCAATCTGTCCGACTCCGGCCATCTCTCCGGCAACCACCGTATCCGCGCGTCCACCAT
CCGTAGCGACCAGAAGATGAGTTCTGCCGGCGGCGGGAGGGGCAAGGCCAAGGCGGCGTC
CAAGATCGTCTCGCGGTCTTCCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGCATCGCCAG
GTACCTCAAGATCGGCAAGTACGCCCAGCGCGTCGGTGCCGGCGCCCCCGTCTACCTCTC
CGCCGTCCTCGAGTACCTCGCCGCTGAGGTCCTGGAGCTCGCCGGCAACGCTGCGCGCGA
CAACAAGAAGACCCGGATCGTGCCGCGCCACATCCAGCTGGCGGTCCGCAACGATGAGGA
GCTGAGTCGGCTTCTGGGCACGGTCACCATTGCCGCCGGCGGTGTGCTGCCCAACATCCA
CACGACGCTGCTCCCCAAGAAAGTCGGCAAGGGCAAGGGCGACATCGGCTCTGCGTCGCA
GGAGTTCTAGAGCCTCGCAGATGAAACCAGCATCATCACAGAAGATTTGAGGACTCTTCT
TTTTCTAGTATGGCGATGCTTTAGGTTGTTAGATTAGTTCTCGGTCAATGCTTTGGTTGG
TGTATCGATGATGAATCTGGTTGGAATGGAATGCTAGCAATCTGGTTCTAGTTAAAAAAA
AAAAAAAATGCTCCTTGTGATATGCCAAATCAAAGTGAAAATATCTTGTTAATCTGGGTA
TGAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_57143.1	818	0.0	196 - 818	100	623 / 623	None	ABC00016 ABC00096 ABC00119 ABC00286 ABC00321 ABC00350 ABC00412 ABC00550 ABC00709 ABC44597
AK374620	653	7e-139	112 - 520	89	364 / 410	CUST_39519_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00671 ABC00709 ABC00869
MLOC_35155.1	682	9e-138	87 - 517	88	379 / 433	CUST_39469_PI390587928	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC44597
MLOC_72638.2	773	6e-110	189 - 584	85	344 / 405	None	ABC00016 ABC00096 ABC00119 ABC00145 ABC00154 ABC00167 ABC00188 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00550 ABC00571 ABC00709 ABC44597
MLOC_64939.2	900	1e-76	270 - 572	84	257 / 306	None	ABC00016 ABC00119 ABC00188 ABC00321 ABC00350 ABC00550 ABC00709 ABC03002 ABC31695 ABC44597
AK252060.1	846	1e-71	150 - 449	83	250 / 301	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00321 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC44597
AK252601.1	938	3e-68	162 - 464	82	254 / 308	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869
AK250581.1	781	3e-68	159 - 461	82	250 / 304	CUST_39507_PI390587928 CUST_21691_PI390587928 CUST_39452_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
MLOC_65728.2	779	3e-63	298 - 516	87	190 / 219	None	ABC00016 ABC00119 ABC00154
MLOC_65728.3	883	3e-63	477 - 695	87	190 / 219	CUST_35201_PI390587928	ABC00016 ABC00119 ABC00154
AK353773	705	2e-59	138 - 439	81	244 / 303	None	ABC00016 ABC00054 ABC00076 ABC00085 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00709 ABC00869
AK248367.1	737	2e-59	167 - 465	81	242 / 300	CUST_39486_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC31767 ABC39313
MLOC_68568.2	976	8e-54	193 - 490	80	238 / 299	CUST_39524_PI390587928	ABC00016 ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00494 ABC00648 ABC00709 ABC00869
MLOC_68568.1	689	8e-54	194 - 491	80	238 / 299	None	ABC00016 ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00494 ABC00648 ABC00709 ABC00869