- Probe CUST_39472_PI390587928
- Source Contig U35_13946
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39472_PI390587928 | Hv_44K_v2 | CCAAGAAGAAGGCCGCCGCCAAGGAGTAGCCTAGCTGACACTTAGTTCGGTATCAGGGAG | 480 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.094 | 1.248 | 1.223 | 1.177 | 0.732 | 0.621 |
| Raw | 18125.600 | 33158.817 | 27622.400 | 41800.467 | 9018.307 | 8460.720 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374121 | 736 | 2e-24 | 502 - 561 | 100 | 60 / 60 | plus | ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC42929 |
| MLOC | MLOC_7342.1 | 436 | 2e-24 | 256 - 315 | 100 | 60 / 60 | minus | ABC00085 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00494 ABC00571 ABC00671 ABC42929 |
| JLOC1 | JLOC1_4841.1 | 382 | 8e-25 | 202 - 261 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC48183 | 564 | 3e-25 | 169 - 228 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC42929 | 347 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus | ABC42929 |
| Harvest21 | ABC00494 | 1167 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus | ABC00494 |
| Harvest21 | ABC00137 | 713 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | ABC00137 |
| Harvest21 | ABC00732 | 619 | 1e-23 | 477 - 536 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00085 | 713 | 6e-22 | 490 - 549 | 97 | 58 / 60 | plus | ABC00085 |
| Harvest35 | U35_44789 | 347 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13962 | 764 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13946 | 540 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus |
Contig Sequence (540 bp)
>U35_13946 540 Hv_44K_v2 ATCCAGCACCCCGCCGCCAACGCCACACCTCGTGACCCCTCGTCGCCGGAGCAGCAGCAA GCAAGATGGCCGGAAGGAAGGGCGGCGACAGGAAGAAGTCGGTGACCAGGTCCGTGAAGG CGGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTATCTCAAGAAGGGCCGCTACGCCC AGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAG AGGTGCTTGAGCTCGCCGGCAACGCCGCCAAGGACAACAAGAAGTCCCGCATCATCCCGC GCCACCTGCTTCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCCGGCGTCA CCATCGCCCACGGCGGCGTCATCCCCAACATCAACTCCGTGCTGCTCCCCAAGAAGTCCG CCGCCGCCGCCGAGAAGGAGGCCACCAAGTCGCCCAAGAAGAAGACCGCTACCAAGTCCC CCAAGAAGAAGGCCGCCGCCAAGGAGTAGCCTAGCTGACACTTAGTTCGGTATCAGGGAG
Homology of Contig U35_13946 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g02300.1 | 157 | 2e-51 | protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g28560.1 | 155 | 4e-51 | |
| Arabidopsis v10 | None |