barSeed - Barley Seed Development Database

Probe CUST_25890_PI390587928

Source Contig U35_36546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25890_PI390587928	Hv_44K_v2	CGATCCTTTACAATCATGTGTTGCTGTGAATGTGAATGTTGCTTTCTTTTCCTTCAAAAA	12	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.404	1.611	1.166	0.936	0.386	0.307
Raw	4580.513	8363.640	5121.923	6401.757	944.169	811.392

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29188.1	718	7e-23	587 - 646	98	59 / 60	plus	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584
MLOC	MLOC_29188.3	531	3e-22	476 - 531	100	56 / 56	plus	ABC00085 ABC00096 ABC00137 ABC00145 ABC00158 ABC00167 ABC00239 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00671 ABC00869 ABC34584
JLOC1	JLOC1_19471.1	620	4e-23	498 - 557	98	59 / 60	plus
Harvest21	ABC31628	550	3e-25	13 - 72	100	60 / 60	minus
Harvest35	U35_36546	550	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (550 bp)

>U35_36546 550 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAGGAAAAGAAAGCAACATTCACATTCACAGCAACACATGAT
TGTAAAGGATCGCATCTGTAGCCATTCCCCACATAAATCAAGTAGCACAAAATACAGACC
TTACGGGCTTGCTCATCGAAGTGATGAAAGAGCCACTACAGACTAGGCACTTACATACAC
ATGATCCACTCAATCAAAAGTCCCATCATCTTCTCCCTGGTATCGAACTAAGCAGTGCAG
GCTAGGCTACGGGGCGCCTACTCCTTGGTGGCGGCGGCCTTCTTCTTGGGGGACTTGGTG
GCGGCCTTCTTCTTGGGCGACTTGGCCTCCTTCTCGGCGGCGGCGGCGGACTTCTTGGGG
AGCAGCACGGAGTTGATGTTGGGGATCACGCCGCCGTGGGCGATGGTCACGCCGGAGAGC
AGCTTGCCGAGCTCCTGGTCGTTGCGGACGGCGAGAAGCAGGTGGCGCGGGACGACGCGG
GTCTTCTTGTTGTCCTTGGCCGCGTTGCCGGCAAGCTCCAGGACCTCGGCGGCGAGGTAC
TCTAGGACGG

Homology of Contig U35_36546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None